Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq31829 125 8e-24 >seq31829 Length=2224 Score = 125 bits (138), Expect = 8e-24 Identities = 240/350 (69%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | ||||| ||||||||||| || | || || || ||||| || Sbjct 2108 ATGTAAGTGTCGATGAGAAGAGAGTACATTTCAGAGTGAATGTTTTCGATGGCAATCTGC 2049 Query 93422 AATCCGTAGAAACATC-TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 | ||||| || || | || || | || ||||| || || ||| || | || | | Sbjct 2048 ATACCGTAAAAGCAGCGTATCTCCGGT-ATCTGAACCTCCTGACTGAAACGTTCAAGCAA 1990 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 ||| || || || |||||| ||| || || || ||||| | | |||||||| Sbjct 1989 ATTCTCTAGTACGATCCCATCGCTTGCAGCGAAGAATGCCAAGACGTAGGAGATAAAATG 1930 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTC 93600 ||| | ||||||| | ||| | || | || ||||||||||| || ||||| Sbjct 1929 ACGCTCGCCCACTTTAAGACTGCTCCAGTGCGACAAGTCCTTTGAAAGATCAACCTCTTC 1870 Query 93601 GACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 || ||||| || || || | ||||| ||||| | | ||||| ||| || ||||| || Sbjct 1869 TACTGTCCAGAAGGAGGCAACGGCTTTCTTGTAAAATTGCCATACGTCGTGGTATTGTAT 1810 Query 93661 TGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGTT 93710 |||||| | ||||||||||| || || || | || | ||||| |||| Sbjct 1809 TGGAAACAAGACAAAACGATGTGGATTCTCGATCAGCAGTGGCTC-AGTT 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553529811831120