Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq230146 120 6e-22 >seq230146 Length=915 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | ||| | ||||||||||| || || |||||||| ||||| || || || Sbjct 564 CCACCACGCAAGCGGAGGACCAAGTGTAGTGTTGATTCTTTTTGTATGTTGTAGTCAGAT 623 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || ||||| | |||||| || || || || | | ||| || || |||||| Sbjct 624 AGTGTACGTCCGTCTTCGAGCTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGTGGA 683 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTAC 68413 || || || ||||| ||||| ||||| || || ||||| || || ||| ||| || Sbjct 684 ATACCCTCTTTGTCCTGAATTTTTGCTTTCACATTTTCGATCGTATC-ACTGCCTTCCAC 742 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || || || || || ||||| || || || ||||| ||||| Sbjct 743 TTCGAGAGTAATTGTCTTACCGGTGAGCGTTTTCACAAATATTTGCAT 790 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||| || || || || |||||||| || || ||||| || Sbjct 792 CCACCTCGCAGACGCAAAACCAGATGAAGGGTAGATTCTTTTTGTATATTGTAATCCGAC 851 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| || || || ||||| | ||||||||||| ||| Sbjct 852 AGGGTGCGCCCATCCTCGAGCTGCTTGCCCGCAAAAATGAGGCGCTGTTGGTCGGGAGGA 911 Query 68355 AT 68356 || Sbjct 912 AT 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916109508249360