Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq230146 96.9 4e-15 >seq230146 Length=915 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||| || |||||||| ||||| || || |||| |||||||||||||| || || Sbjct 600 TCTTTTTGTATGTTGTAGTCAGATAGTGTACGTCCGTCTTCGAGCTGCTTGCCAGCAAAA 659 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGT 46521 ||||| || ||||| || | || | | ||| |||||| ||| || | | || | | Sbjct 660 ATCAAACGTTGCTGATCTGGTGGAATACCCTCTTTGTCC-TGAATTTTTGCTTTCACATT 718 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||| || || |||||| || | || || || || || || |||||||| || Sbjct 719 TTCGATCGTATCACTGCCTTCCACTTCGAGAGTAATTGTCTTACCGGTGAGCGTTTTCAC 778 Query 46582 AAAGATTTGCAT 46593 ||| |||||||| Sbjct 779 AAATATTTGCAT 790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | |||||| |||||||| | ||| || ||||| |||||||| || || Sbjct 792 CCACCTCGCAGACGCAAAACCAGATGAAGGGTAGATTCTTTTTGTATATTGTAATCCGAC 851 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || |||||| | || |||||||||||||| || || || | |||||| ||||||| Sbjct 852 AGGGTGCGCCCATCCTCGAGCTGCTTGCCCGCAAAAATGAGGCGCTGTTGGTCGG 906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561857299331760