Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq31829 132 5e-26 seq230146 113 4e-20 >seq31829 Length=2224 Score = 132 bits (146), Expect = 5e-26 Identities = 239/344 (69%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| || |||||||| ||||| | ||| || ||||| || || | Sbjct 2106 GTAAGTGTCGATGAGAAGAGAGTACATTTCAGAGTGAATGTTTTCGATGGCAATCTGCAT 2047 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||||||||| || ||| | ||| || || ||| |||||| || | || ||| Sbjct 2046 ACCGTAAAAGCAGCGTATCTCCGGTATCTGAACCTCCTGACTGAAACGTTCAAGCAAATT 1987 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||| || ||||| || ||||| || |||| |||| ||| ||||| || Sbjct 1986 CTCTAGTACGATCCCATCGCTTGCAGCGAAGAATGCCAAGACGTAGGAGATAAAATGACG 1927 Query 133347 CTCGTTGTCGTTCA-AGCGCTCCCAGTCGCG-CGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| | || | | ||| ||||| ||| | |||||| || || || ||||| || Sbjct 1926 CTCGCCCACTTTAAGACTGCT-CCAGT-GCGACAAGTCCTTTGAAAGATCAACCTCTTCT 1869 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATG 133464 || ||||| || || || ||||||| ||||| | ||| | ||| |||||||| Sbjct 1868 ACTGTCCAGAAGGAGGCAACGGCTTTCTTGTAAAATTGCCATACGTCGTGGTATTGTATT 1809 Query 133465 GGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 ||||| | ||||| || | || || ||| || ||| ||||| Sbjct 1808 GGAAACAAGACAAAACGATGTGGATTCTCGATCAGCAGTGGCTC 1765 >seq230146 Length=915 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||||||||| || || || || || |||| || || | || Sbjct 790 ATGCAAATATTTGTGAAAACGCTCACCGGTAAGACAATTACTCTCGAAGTGGAAGGCAGT 731 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| |||||| | ||||||||||| ||||| | || || Sbjct 730 GATACGATCGAAAATGTGAAAGCAAAAATTCAGGACAAAGAGGGTATTCCACCAGATCAG 671 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || ||||| ||||| || |||| || || || ||||||||| Sbjct 670 CAACGTTTGATTTTTGCTGGCAAGCAGCTCGAAGACGGACGTACACTATCTGACTACAAC 611 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| || || ||| | || || Sbjct 610 ATACAAAAAGAATCAACACTACACTTGGTCCTCCGCTTGCGTGGTGG 564 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 ||||| ||||||||||||| ||||||| |||||||| ||||| || || | ||||||| Sbjct 913 ATTCCTCCCGACCAACAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGATGGGCGCACC 854 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468 || || ||||| || ||||| ||| | || || ||| |||| ||||| || |||| Sbjct 853 CTGTCGGATTACAATATACAAAAAGAATCTACCCTTCATCTGGTTTTGCGTCTGCGAGGT 794 Query 38469 GG 38470 || Sbjct 793 GG 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497180903857920