Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09-
24] 478,538 sequences; 547,921,014 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq31829 132 5e-26
seq230146 113 4e-20
>seq31829
Length=2224
Score = 132 bits (146), Expect = 5e-26
Identities = 239/344 (69%), Gaps = 4/344 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| || |||||||| ||||| | ||| || ||||| || || |
Sbjct 2106 GTAAGTGTCGATGAGAAGAGAGTACATTTCAGAGTGAATGTTTTCGATGGCAATCTGCAT 2047
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||||||||| || ||| | ||| || || ||| |||||| || | || |||
Sbjct 2046 ACCGTAAAAGCAGCGTATCTCCGGTATCTGAACCTCCTGACTGAAACGTTCAAGCAAATT 1987
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|| ||||| || ||||| || ||||| || |||| |||| ||| ||||| ||
Sbjct 1986 CTCTAGTACGATCCCATCGCTTGCAGCGAAGAATGCCAAGACGTAGGAGATAAAATGACG 1927
Query 133347 CTCGTTGTCGTTCA-AGCGCTCCCAGTCGCG-CGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|||| | || | | ||| ||||| ||| | |||||| || || || ||||| ||
Sbjct 1926 CTCGCCCACTTTAAGACTGCT-CCAGT-GCGACAAGTCCTTTGAAAGATCAACCTCTTCT 1869
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATG 133464
|| ||||| || || || ||||||| ||||| | ||| | ||| ||||||||
Sbjct 1868 ACTGTCCAGAAGGAGGCAACGGCTTTCTTGTAAAATTGCCATACGTCGTGGTATTGTATT 1809
Query 133465 GGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
||||| | ||||| || | || || ||| || ||| |||||
Sbjct 1808 GGAAACAAGACAAAACGATGTGGATTCTCGATCAGCAGTGGCTC 1765
>seq230146
Length=915
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||||||||| || ||||||||||| || || || || || |||| || || | ||
Sbjct 790 ATGCAAATATTTGTGAAAACGCTCACCGGTAAGACAATTACTCTCGAAGTGGAAGGCAGT 731
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| | |||| |||||| | ||||||||||| ||||| | || ||
Sbjct 730 GATACGATCGAAAATGTGAAAGCAAAAATTCAGGACAAAGAGGGTATTCCACCAGATCAG 671
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | |||| || ||||| ||||| || |||| || || || |||||||||
Sbjct 670 CAACGTTTGATTTTTGCTGGCAAGCAGCTCGAAGACGGACGTACACTATCTGACTACAAC 611
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| ||||| ||| | || || || ||||| || || ||| | || ||
Sbjct 610 ATACAAAAAGAATCAACACTACACTTGGTCCTCCGCTTGCGTGGTGG 564
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408
||||| ||||||||||||| ||||||| |||||||| ||||| || || | |||||||
Sbjct 913 ATTCCTCCCGACCAACAGCGCCTCATTTTTGCGGGCAAGCAGCTCGAGGATGGGCGCACC 854
Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468
|| || ||||| || ||||| ||| | || || ||| |||| ||||| || ||||
Sbjct 853 CTGTCGGATTACAATATACAAAAAGAATCTACCCTTCATCTGGTTTTGCGTCTGCGAGGT 794
Query 38469 GG 38470
||
Sbjct 793 GG 792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 497180903857920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |