Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq59845 435 4e-117 seq80486 113 6e-20 >seq59845 Length=1762 Score = 435 bits (482), Expect = 4e-117 Identities = 971/1440 (67%), Gaps = 23/1440 (2%) Strand=Plus/Plus Query 6570 CATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATA 6629 |||| || | |||||||| || || || ||||| ||||| || || ||||| | Sbjct 336 CATCCTCCGCCTTATACTTCTCTGCCTCCGCAACCATACGGTCAATCTCATCCTTCGACA 395 Query 6630 ATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCA 6688 | ||||| || ||||| ||||| ||||| ||| | || || | | ||| || | Sbjct 396 GACGTCCCTTGTCGTTCGTGATCGTTATCTTGTTCTGCTTC-CCTGTCGTCTTCTCCACC 454 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || ||||||| ||| ||||| ||||| | || ||| | || | || || || | Sbjct 455 GCCGACACATTCAGAATCCCATTCGCATCGATGTCAAACGTCACCTCTATCTGCGGCACA 514 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||| || | |||||||||| | || || | ||||| || |||| || || Sbjct 515 CCACGCGGCGCAGGCGGAATACCCGACAGCTCGAACTTCCCAAGCAAGTTGTTGTC--TC 572 Query 6809 GCCTTCTTA---CGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGT 6865 || | | || || ||||| || || || | ||| ||| ||||||| || || Sbjct 573 GCGT-CATAGCTCGCTCACCCTCGTACACCTGAATCAGCACACCAGGTTGGTTGTCCGAA 631 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 ||| | || | || | ||| | ||||||||||| || | | || | | Sbjct 632 TACGTGGTAAACGTCTGCGTCTGCTTCGTCGGAATCGTCGTGTTCCGCTTGATCAATGCA 691 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | |||||| |||||| || || ||||||| || | ||| |||| | | | Sbjct 692 GTCATCACACCACCTGCAGTTTCCAGACCCAGAGACAACGGAGCCACATCCAGCAACAGC 751 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | || || |||| ||| | || ||||| || || || || || || | || ||| Sbjct 752 AAATCCTGCACAGCCTCGGACTTGTCGCCCGTCAAAATCGCAGCCTGCACAGCAGCACCG 811 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || ||||||||||| || || |||| || |||| || |||||||| || ||||| Sbjct 812 TAGGCCACCGCCTCATCCGGATTGATCGACTTGTTCAACTCCTTACCGTTGAAGAAATCC 871 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 |||| || || | ||||||||| || ||||| ||||| ||||| ||||| || | Sbjct 872 TGCAACAGTTTCTGCACTTTCGGGATACGCGTCGAACCACCCACCAACACGATGTCGTGA 931 Query 7166 ACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACA 7221 | | | | | || || ||||| | ||| || || | || || || || || | ||| Sbjct 932 A-TCTGGTTCTTGTCCATCTTCGCGTCACGCAGCGCCTTCTCCACTGGATCAAGTGTACC 990 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 ||||||||| ||| | ||| ||||||||||| ||||| || || | || ||||| Sbjct 991 ---ACGGAACAAATCCGCATTCAGCTCCTCAAAACGCGCACGCGTGATCGTCGTGTAGAA 1047 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 |||| || || || ||||| || || || | | | || || ||||| ||||| Sbjct 1048 GTCAATACCCTCATACAACGAGTCGATCTCCAAATTCGCCTGAGCGCTCGAACTCAACGT 1107 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || || ||||||||||| ||||| ||||| | |||||| ||| | ||| Sbjct 1108 ACGCTTCGCACGTTCACACGCCGTGCGTAACCGACGCACCGCACGCTTGTTGTCACTAAT 1167 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 ||| |||||||| || ||||| ||||| |||||| | || | | ||||| Sbjct 1168 ATCCTTCTTATGCTTCCGTTTGAACTCGGATATGAAGTGACTAACCATCCGGTTGTCGAA 1227 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || || |||||||| || || || || || |||| || || ||||| | ||| | || Sbjct 1228 GTCCTCGCCACCCAAATGAGTGTCACCAGCTGTCGACTTCACCTCAAACACACCATCCTC 1287 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CG 7580 || | |||| ||| ||||| || ||||| || || || || ||||| || ||||| || Sbjct 1288 GATCGTCAACACCGACACATCGAATGTACCGCCGCCGAGATCGAAAATTAGCACGTTGCG 1347 Query 7581 TATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | || | | ||||| || || ||||||||||| || || ||||| || || || | Sbjct 1348 T-TCAGCACCAACTTTCTTGTCCAGCCCGTACGCGATCGCAGCAGCCGTCGGCTCGTTGA 1406 Query 7641 TAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | ||||| || ||| ||||| ||||| || | ||||||| || ||||| || || || Sbjct 1407 TGATACGCAACACA-TTCAGACCAGCTATCATACCCGCATCCTTAGTCGCCTGACGCTGA 1465 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| ||||| || || ||||| | || || || | ||| ||||||| |||||| Sbjct 1466 CTGTCGTTGAAGTAAGCAGGCACCGTGATCACTGCATCTTTTACTGTCTTACCAAGATAC 1525 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | |||||||| || ||||| || || | ||||| ||||| ||||| || || | |||| Sbjct 1526 GCCTCCGCGATCTCCTTCATCTTCGTCAACACCATTGATGATATCTCCTCTGCGGAAAAC 1585 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATA 7879 ||||| || || ||||| || || | | | ||||| | ||| | | | ||| Sbjct 1586 GTCTTCGTCTCGCCTTTAAATTCCACACGTACCTTCGGTTTGT-CGC--CGTCTGCGATC 1642 Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 || | ||||||| | || ||| || || | | || || | ||| Sbjct 1643 ACATCGAACGACCAGTGCTTGCGATCAGACTGCACAGATGGATCATTGAAGCGACGCCCG 1702 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || || || || || ||||| |||||||| | |||||||| || |||||||||||| Sbjct 1703 ATCAGCCGTTTGGCGTCAAACACTGTGTTCTGCGGGTTCATCGCCACCTGGTTCTTCGCC 1762 >seq80486 Length=1561 Score = 113 bits (124), Expect = 6e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 184211 GCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCA 184270 || ||||| |||||| | ||| || || ||||||||||||||||||| |||||| ||| Sbjct 608 GCTTCACGTACGTTCAAAAGTTTGCCTCTGAGCGGAAAAACACCGTAATTATCACGGCCA 667 Query 184271 ACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGA 184330 ||||| |||||||| | || | | || || ||||| ||||| || | ||||||| Sbjct 668 ACAACCCCGAGACCAGCTACAGCCAAAGACTTGGCTGAATCCCCTTCTGTCAAAATAAGA 727 Query 184331 GTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 || || || ||||| | || || || ||||| |||||||| | || ||||| ||| Sbjct 728 GTGCAATTGGACGAGTGCTTAGTGCCTGCATTATTCGCATCGTCCAACTTAGGAATCCCC 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631333610251920