Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq230146 105 5e-17 seq220043 87.8 1e-11 >seq230146 Length=915 Score = 105 bits (116), Expect = 5e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 ||||| || | || || || |||||| || ||||| |||| ||| || | | Sbjct 576 CGGAGGACCAAGTGTAGTGTTGATTCTTTTTGTATGTTGTAGTCAGATAGTGTACGTCCG 635 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| || || || || |||||||| | | ||||||||| || ||||| || ||||| Sbjct 636 TCTTCGAGCTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCCTCTTTG 695 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAAC 563438 || ||||||||| ||| || || || |||||| || | || ||||||||||| Sbjct 696 TCCTGAATTTTTGCTTTCACATTTTCGATCGTATCACTGCCT-TCCACTTCGAGAGTAAT 754 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||||| || || ||||| || || ||||||||| Sbjct 755 TGTCTTACCGGTGAGCGTTTTCACAAATATTTGCATA 791 >seq220043 Length=940 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || ||||| || || || | || || || ||||||||||| |||||||||||||||||| Sbjct 878 GGAATTCCACCAGCACCCAGAGGTGTGCCACAAATTGAAGTCACTTTCGATATCGATGCC 819 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 ||||||||| | |||||| |||| Sbjct 818 AATGGAATTCTCAATGTGTCTGC 796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4003988752353620