Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq230146 107 1e-17 seq23899 98.7 6e-15 >seq230146 Length=915 Score = 107 bits (118), Expect = 1e-17 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| ||||||||||| | |||||| ||||| || ||||| || || ||| Sbjct 636 TCTTCGAGCTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATACCCTCTTTG 695 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || ||||| ||| ||| ||| ||| || |||||| || | ||| || ||||| Sbjct 696 TCCTGAATTTTTGCTTTCACATTTTCGATCGTATCACTGCCTTCCACTTCGAGAGTAATT 755 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||||||||| || || || || ||||| Sbjct 756 GTCTTACCGGTGAGCGTTTTCACAAATATTTG 787 >seq23899 Length=2450 Score = 98.7 bits (108), Expect = 6e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 474646 TAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC 474705 |||| |||| | || ||| |||||||| | ||||| |||| ||||||||| ||| || Sbjct 1146 TAAATTATTTGCTCCAGAAGAAATTTCTGCCATGGTGTTAGGAAAAATGAAAGAAAGTGC 1087 Query 474706 GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 | | || ||||| | || || ||||||| | || |||||||||||||| || Sbjct 1086 GGAGGCCTACCTTGGGAAGCCTGTCACACATGCAGTGGTCACCGTTCCAGCATATTTCAA 1027 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 ||| |||| || ||||| || |||||||||||| Sbjct 1026 CGATGCTCAGCGGCAAGCTACAAAAGATGCGGGA 993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3247652383313624