Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq59845 407 2e-108 seq230146 156 6e-33 seq23899 93.3 6e-14 seq220043 84.2 3e-11 >seq59845 Length=1762 Score = 407 bits (450), Expect = 2e-108 Identities = 864/1274 (68%), Gaps = 22/1274 (2%) Strand=Plus/Minus Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 ||| |||||| | || |||| ||| ||| | | || || || || || |||||||| Sbjct 1612 TGTGGAATTTAAAGGCGAGACGAAGACGTTTTCCGCAGAGGAGATATCATCAATGGTGTT 1553 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 || ||||||||||||| ||||| | | | ||||| || || ||||||||||| | Sbjct 1552 GACGAAGATGAAGGAGATCGCGGAGGCGTATCTTGGTAAGACAGTAAAAGATGCAGTGAT 1493 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || ||||||||||||| || || || |||||||| ||||| || | | || Sbjct 1492 CACGGTGCCTGCTTACTTCAACGACAGTCAGCGTCAGGCGACTAAGGATGCGGGTATGAT 1433 Query 195778 TGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 || ||||| || ||| || | || ||||| || || || || ||||| || || || | Sbjct 1432 AGCTGGTCTGAA-TGTGTTGCGTATCATCAACGAGCCGACGGCTGCTGCGATCGCGTACG 1374 Query 195837 GTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 | ||||||||||| | | || || || | || || |||||||| || |||| Sbjct 1373 GGCTGGACAAGAAAGTTGGTGCTGAACGCAACGTGCTAATTTTCGATCTCGGCGGCGGTA 1314 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | || ||||| || | | | || || | |||| | || || || ||| | || |||| Sbjct 1313 CATTCGATGTGTCGGTGTTGACGATCGAGGATGGTGTGTTTGAGGTGAAGTCGACAGCTG 1254 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT- 196015 |||| |||||| | ||||| || || ||||| || | | |||| | || || Sbjct 1253 GTGACACTCATTTGGGTGGCGAGGACTTCGACAACCGGATGGTTAGTCACT--TCATATC 1196 Query 196016 -GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCT 196074 |||||| || ||| ||||||| |||||| || || | || | |||||| | Sbjct 1195 CGAGTTCAAACGGAAGCATAAGAAGGATATTAGTGACAACAAGCGTGCGGTGCGTCGGTT 1136 Query 196075 TAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGA 196134 | || || ||||||||||| || || || | ||| | ||||| | | | || Sbjct 1135 ACGCACGGCGTGTGAACGTGCGAAGCGTACGTTGAGTTCGAGCGCTCAGGCGAATTTGGA 1076 Query 196135 GATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGA 196194 ||| || ||||||| ||| || ||||||||||| || || || || ||||| |||||||| Sbjct 1075 GATCGACTCGTTGTATGAGGGTATTGACTTCTACACGACGATCACGCGTGCGCGTTTTGA 1016 Query 196195 AGAGTTAAACTCTGATTTGTTTAGGAAGTGTA-TGGAACCTGTTGAACAAGTACTTCGTG 196253 ||| | || | |||||| || | || | | || || || || | | || |||| Sbjct 1015 GGAGCTGAATGCGGATTTG-TTCCGTGGTACACTTGATCCAGTGGAGAAGGCGCTGCGTG 957 Query 196254 ACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTA 196313 |||| |||||||| ||| || || | || || || | ||||| || || || |||| Sbjct 956 ACGCGAAGATGGACAAGAACCAGATTCACGACATCGTGTTGGTGGGTGGTTCGACGCGTA 897 Query 196314 TTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAACG 196372 | ||||| | || | || || | | |||||||| ||| || || ||||| || Sbjct 896 TCCCGAAAGTGCAGAAACTG-TTGCAGGATTTCTTCAACGGTAAGGAGTTGAACAAGTCG 838 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| |||||||| || || || || ||||| || || |||||||| ||| | | || Sbjct 837 ATCAATCCGGATGAGGCGGTGGCCTACGGTGCTGCTGTGCAGGCTGCGATTTTGACGGG- 779 Query 196433 GTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 ||||| | || || ||| | ||| | || ||||| || || | || ||| Sbjct 778 --CGACAAGTCCGAGGCTGTGCAGGATTTGCTGTTGCTGGATGTGGCTCCGTTGTCTCTG 721 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||||| ||||| || |||||||| |||||| | | || | ||||||| || |||||| Sbjct 720 GGTCTGGAAACTGCAGGTGGTGTGATGACTGCATTGATCAAGCGGAACACGACGATTCCG 661 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || ||| || || ||| | |||||||| || || ||||| ||||| | ||||| Sbjct 660 ACGAAGCAGACGCAGACGTTTACCACGTATTCGGACAACCAACCTGGTGTGCTGATTCAG 601 Query 196610 GTATATGAAGGAGAAC--GCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATT 196667 || || || || || | ||| || | || ||| | | ||||| | ||||| Sbjct 600 GTGTACGAGGGTGAGCGAGCTATGACGCGA--GACAACAACTTGCTTGGGAAGTTCGAGC 543 Query 196668 TGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAG 196727 || |||| ||||| |||| || | ||||| || ||||| | || || || || | Sbjct 542 TGTCGGGTATTCCGCCTGCGCCGCGTGGTGTGCCGCAGATAGAGGTGACGTTTGACATCG 483 Query 196728 ACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-AAG 196786 | || ||||| ||||| || || | || | ||| ||| | | || || | ||| ||| Sbjct 482 ATGCGAATGGGATTCTGAATGTGTCGGCGGTGGAGAAGACGACAGG-GAAGCAGAACAAG 424 Query 196787 ATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAA 196846 || ||| || || |||||||| || || || ||||| || ||||| ||||||||| Sbjct 423 ATAACGATCACGAACGACAAGGGACGTCTGTCGAAGGATGAGATTGACCGTATGGTTGCG 364 Query 196847 GATGCGGAAAAGTA 196860 || || || ||||| Sbjct 363 GAGGCAGAGAAGTA 350 >seq230146 Length=915 Score = 156 bits (172), Expect = 6e-33 Identities = 167/219 (76%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| ||||||||||| || || || || || || || ||||| || || Sbjct 795 GTGGTATGCAAATATTTGTGAAAACGCTCACCGGTAAGACAATTACTCTCGAAGTGGAA- 737 Query 171917 CGTCAG--ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACC 171974 | ||| | || ||||| || | ||||| || ||||| || || || || |||||||| Sbjct 736 -GGCAGTGATACGATCGAAAATGTGAAAGCAAAAATTCAGGACAAAGAGGGTATTCCACC 678 Query 171975 CGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGA 172034 ||||||||||| | ||||||||||| || ||||| ||||| |||||||| || |||| Sbjct 677 AGATCAGCAACGTTTGATTTTTGCTGGCAAGCAGCTCGAAGACGGACGTACACTATCTGA 618 Query 172035 TTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||||| | ||||| || || || |||||| | || || Sbjct 617 CTACAACATACAAAAAGAATCAACACTACACTTGGTCCT 579 >seq23899 Length=2450 Score = 93.3 bits (102), Expect = 6e-14 Identities = 127/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 195821 GCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTT 195880 ||||| ||||| |||||| |||| || || ||| | || ||| | || | | Sbjct 768 GCTGCTATTGCATATGGTTTGGATAAAAA---GGAAGGGGAGCGTAATATCTTAGTTTAC 712 Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940 ||||| ||||||||||| || |||||||| ||||| | ||| ||| |||| | ||||| Sbjct 711 GATCTAGGTGGTGGTACCTTCGATGTCTCGCTTCTAACTATCGAAAATGGTGTCTTCGAG 652 Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTT 195997 || | ||||| ||||| || ||||| || || |||||||| ||| |||| || Sbjct 651 GTTATTGCTACGAACGGTGACACCCATCTTGGAGGCGAAGATTTTGATCAACGTGTT 595 >seq220043 Length=940 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTC 196720 ||||| || | || |||||| | |||||||||||||| ||||| ||| | || ||| Sbjct 890 TTCGAACTGTCTGGAATTCCACCAGCACCCAGAGGTGTGCCACAAATTGAAGTCACTTTC 831 Query 196721 GATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGA-CAAGGCTTCTGGCAAATC 196779 ||||| || || ||||||||||| || || | || | ||| | | || |||| || | Sbjct 830 GATATCGATGCCAATGGAATTCTCAATGTGTCTGCGGTGGACCGAAGC-ACTGG-GAAGC 773 Query 196780 TGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTA 196838 ||| ||||| || || ||||||||||| || | || || | || || || || | Sbjct 772 AGAATAAGATCACAATCACGAATGACAAGGGACGATTGTCGAAAGCAGATATCGAGCGAA 713 Query 196839 TGGTTCAAGATGCGGAA 196855 || || | ||||| ||| Sbjct 712 TGATTAATGATGCCGAA 696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 653927248035360