Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09-
24] 478,538 sequences; 547,921,014 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq230146 176 1e-38
seq59845 147 7e-30
seq23899 86.0 2e-11
>seq230146
Length=915
Score = 176 bits (194), Expect = 1e-38
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
|| |||||||| || | || || | || || || || |||||||| || || || |||
Sbjct 561 ATCCCACCACGCAAGCGGAGGACCAAGTGTAGTGTTGATTCTTTTTGTATGTTGTAGTCA 620
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|||| ||| || || ||||| || || || |||||||| || | |||||||||||| ||
Sbjct 621 GATAGTGTACGTCCGTCTTCGAGCTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGT 680
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
||||| || ||||| ||||||||||| ||||| ||||| || |||| |||| |||
Sbjct 681 GGAATACCCTCTTTGTCCTGAATTTTTGCTTTCACATTTTCGATCGTATCACTGCCTTCC 740
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || |||| |||||| ||||| || ||||| ||||| || |||||
Sbjct 741 ACTTCGAGAGTAATTGTCTTACCGGTGAGCGTTTTCACAAATATTTGCAT 790
>seq59845
Length=1762
Score = 147 bits (162), Expect = 7e-30
Identities = 538/834 (65%), Gaps = 14/834 (2%)
Strand=Plus/Minus
Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557
|| |||| |||||| || || || || |||| | || || || ||||||||||| ||
Sbjct 1611 GTGGAATTTAAAGGCGAGACGAAGACG-TTTTCCGCAGAGGAGATATCATCAATGGTGTT 1553
Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617
|| |||||||| || || || || ||| | ||| | ||||||| ||||| || ||
Sbjct 1552 GACGAAGATGAAGGAGATCGCGGAGGCGTATCTTGGTAAGACAGTAAAAGATGCAGTGAT 1493
Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677
|| || || || || || || || |||||| || || || ||||| || | ||
Sbjct 1492 CACGGTGCCTGCTTACTTCAACGACAGTCAGCGTCAGGCGACTAAGGATGCGGGTATGAT 1433
Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737
|| || | ||||| | | || || || || || || ||||| || || || || ||
Sbjct 1432 AGCTGGTCTGAATGTGTTGCGTATCATCAACGAGCCGACGGCTGCTGCGATCGCGTACGG 1373
Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797
||| || || | || ||| || | || ||||| ||| | || || |||||
Sbjct 1372 GCTGGACAAGAAAGTTGGTGCTGAACGCAACGTGCTAATTTTCGATCTCGGCGGCGGTAC 1313
Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857
|| ||||| || | | || | || || || | ||||| || || | || |||||
Sbjct 1312 ATTCGATGTGTCGGTGTTGACGATCGAGGATGGTGTGTTTGAGGTGAAGTCGACAGCTGG 1253
Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917
||| || ||| | ||||| || || || || || || | ||| || || | ||
Sbjct 1252 TGACACTCATTTGGGTGGCGAGGACTTCGACAACCGGATGGTTAGTCACTTCATATCCGA 1193
Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976
|| || || |||| ||| | |||||| | || || | || ||||||| ||
Sbjct 1192 GTTCAAACG-GAAGCATAAGAAGGATATTAGTGACAACAAGCGTGCGGTGCGTCGGTTAC 1134
Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036
| || |||||||||||||| |||||| | || || | | || | | | || |
Sbjct 1133 GCACGGCGTGTGAACGTGCGAAGCGTACGTTGAGTTCGAGCGCTCAGGCGAATTTGGAGA 1074
Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096
| || || | ||| || | || |||| | | || || ||||| || ||||| |
Sbjct 1073 TCGACTCGTTGTATGAGGGTATTGACTTCTACACGACGATCACGCGTGCGCGTTTTGAGG 1014
Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156
| | | |||| | || | | ||| | ||||| ||||| || | | || |
Sbjct 1013 AGCTGAATGCGGATTTGTTCCGTGGTACACTTGATCCAGTGGAGAAGGCGCTGCGTGACG 954
Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216
| || ||| ||| || |||||| | || | || || || |||||||| || ||||| |
Sbjct 953 CGAAGATGGACAAGAACCAGATTCACGACATCGTGTTGGTGGGTGGTTCGACGCGTATCC 894
Query 350217 CAAAAGTTC---AACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGA--TC 350271
| ||||| | ||| ||| | || || || || || || || || | | ||
Sbjct 893 CGAAAGTGCAGAAACTGTTGC---AGGATTTCTTCAACGGTAAGGA--GTTGAACAAGTC 839
Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325
|| ||||| ||||| || || || || ||||||||||| ||||| | |||||
Sbjct 838 GATCAATCCGGATGAGGCGGTGGCCTACGGTGCTGCTGTGCAGGCTGCGATTTT 785
>seq23899
Length=2450
Score = 86.0 bits (94), Expect = 2e-11
Identities = 127/177 (72%), Gaps = 5/177 (3%)
Strand=Plus/Minus
Query 349719 CTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTT 349778
|||| || ||||||||||| | ||||||| | || || ||||| |||| ||
Sbjct 770 CTGCTGCTATTGCATATGGTTTGGATAAAAAG---GAAGGGGAGCGTAATAT-CTTAGTT 715
Query 349779 TT-GATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTT 349837
| ||| ||||||||||||| || ||||| || || ||||| | ||| | || | ||
Sbjct 714 TACGATCTAGGTGGTGGTACCTTCGATGTCTCGCTTCTAACTATCGAAAATGGTGTCTTC 655
Query 349838 GAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894
|| |||| || || ||||| || |||||||| || |||||||||||| | |||
Sbjct 654 GAGGTTATTGCTACGAACGGTGACACCCATCTTGGAGGCGAAGATTTTGATCAACGT 598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1505963968996014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |