Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq230146 176 1e-38 seq59845 147 7e-30 seq23899 86.0 2e-11 >seq230146 Length=915 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 || |||||||| || | || || | || || || || |||||||| || || || ||| Sbjct 561 ATCCCACCACGCAAGCGGAGGACCAAGTGTAGTGTTGATTCTTTTTGTATGTTGTAGTCA 620 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 |||| ||| || || ||||| || || || |||||||| || | |||||||||||| || Sbjct 621 GATAGTGTACGTCCGTCTTCGAGCTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGT 680 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || ||||| ||||||||||| ||||| ||||| || |||| |||| ||| Sbjct 681 GGAATACCCTCTTTGTCCTGAATTTTTGCTTTCACATTTTCGATCGTATCACTGCCTTCC 740 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| |||||| ||||| || ||||| ||||| || ||||| Sbjct 741 ACTTCGAGAGTAATTGTCTTACCGGTGAGCGTTTTCACAAATATTTGCAT 790 >seq59845 Length=1762 Score = 147 bits (162), Expect = 7e-30 Identities = 538/834 (65%), Gaps = 14/834 (2%) Strand=Plus/Minus Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || |||| |||||| || || || || |||| | || || || ||||||||||| || Sbjct 1611 GTGGAATTTAAAGGCGAGACGAAGACG-TTTTCCGCAGAGGAGATATCATCAATGGTGTT 1553 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || |||||||| || || || || ||| | ||| | ||||||| ||||| || || Sbjct 1552 GACGAAGATGAAGGAGATCGCGGAGGCGTATCTTGGTAAGACAGTAAAAGATGCAGTGAT 1493 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || || || |||||| || || || ||||| || | || Sbjct 1492 CACGGTGCCTGCTTACTTCAACGACAGTCAGCGTCAGGCGACTAAGGATGCGGGTATGAT 1433 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | ||||| | | || || || || || || ||||| || || || || || Sbjct 1432 AGCTGGTCTGAATGTGTTGCGTATCATCAACGAGCCGACGGCTGCTGCGATCGCGTACGG 1373 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||| || || | || ||| || | || ||||| ||| | || || ||||| Sbjct 1372 GCTGGACAAGAAAGTTGGTGCTGAACGCAACGTGCTAATTTTCGATCTCGGCGGCGGTAC 1313 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || | | || | || || || | ||||| || || | || ||||| Sbjct 1312 ATTCGATGTGTCGGTGTTGACGATCGAGGATGGTGTGTTTGAGGTGAAGTCGACAGCTGG 1253 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || ||| | ||||| || || || || || || | ||| || || | || Sbjct 1252 TGACACTCATTTGGGTGGCGAGGACTTCGACAACCGGATGGTTAGTCACTTCATATCCGA 1193 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || || || |||| ||| | |||||| | || || | || ||||||| || Sbjct 1192 GTTCAAACG-GAAGCATAAGAAGGATATTAGTGACAACAAGCGTGCGGTGCGTCGGTTAC 1134 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || |||||||||||||| |||||| | || || | | || | | | || | Sbjct 1133 GCACGGCGTGTGAACGTGCGAAGCGTACGTTGAGTTCGAGCGCTCAGGCGAATTTGGAGA 1074 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || || | ||| || | || |||| | | || || ||||| || ||||| | Sbjct 1073 TCGACTCGTTGTATGAGGGTATTGACTTCTACACGACGATCACGCGTGCGCGTTTTGAGG 1014 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | | |||| | || | | ||| | ||||| ||||| || | | || | Sbjct 1013 AGCTGAATGCGGATTTGTTCCGTGGTACACTTGATCCAGTGGAGAAGGCGCTGCGTGACG 954 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | || ||| ||| || |||||| | || | || || || |||||||| || ||||| | Sbjct 953 CGAAGATGGACAAGAACCAGATTCACGACATCGTGTTGGTGGGTGGTTCGACGCGTATCC 894 Query 350217 CAAAAGTTC---AACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGA--TC 350271 | ||||| | ||| ||| | || || || || || || || || | | || Sbjct 893 CGAAAGTGCAGAAACTGTTGC---AGGATTTCTTCAACGGTAAGGA--GTTGAACAAGTC 839 Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 || ||||| ||||| || || || || ||||||||||| ||||| | ||||| Sbjct 838 GATCAATCCGGATGAGGCGGTGGCCTACGGTGCTGCTGTGCAGGCTGCGATTTT 785 >seq23899 Length=2450 Score = 86.0 bits (94), Expect = 2e-11 Identities = 127/177 (72%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 349719 CTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTT 349778 |||| || ||||||||||| | ||||||| | || || ||||| |||| || Sbjct 770 CTGCTGCTATTGCATATGGTTTGGATAAAAAG---GAAGGGGAGCGTAATAT-CTTAGTT 715 Query 349779 TT-GATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTT 349837 | ||| ||||||||||||| || ||||| || || ||||| | ||| | || | || Sbjct 714 TACGATCTAGGTGGTGGTACCTTCGATGTCTCGCTTCTAACTATCGAAAATGGTGTCTTC 655 Query 349838 GAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGT 349894 || |||| || || ||||| || |||||||| || |||||||||||| | ||| Sbjct 654 GAGGTTATTGCTACGAACGGTGACACCCATCTTGGAGGCGAAGATTTTGATCAACGT 598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505963968996014