Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq31829 107 2e-18 >seq31829 Length=2224 Score = 107 bits (118), Expect = 2e-18 Identities = 195/283 (69%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 4808 TGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTAT 4867 ||| || | ||| |||||||| || || || ||||||||||| || || ||||| || Sbjct 2118 TGGATCCTTAATGTAAGTGTCGATGAGAAGAGAGTACATTTCAGAGTGAATGTTTTCGAT 2059 Query 4868 AGCAATCTGAAATCCGTAAAAGCATC-TAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| | ||||||||||| | || | || | || ||||| || | || || | Sbjct 2058 GGCAATCTGCATACCGTAAAAGCAGCGTATC-TCCGGTATCTGAACCTCCTGACTGAAAC 2000 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 ||| | || || || ||| || || || || || || || || ||||| || | | Sbjct 1999 GTTCAAGCAAATTCTCTAGTACGATCCCATCGCTTGCAGCGAAGAATGCCAAGACGTAGG 1940 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 | ||||| | | ||| | ||||| | ||||||| | ||| || || | | || Sbjct 1939 AGATAAAATGACGCTCGCCCACTTTAAGACTGCTCCAGTGCGACAAGTCCTTTGAAAGAT 1880 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 |||| ||||| || ||||| || || || | ||||| ||||| Sbjct 1879 CAACCTCTTCTACTGTCCAGAAGGAGGCAACGGCTTTCTTGTA 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424558969063154