Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicrocoelium_20dendriticum_20[genbank_20GCA_5F000950715.1_202014-09- 24] 478,538 sequences; 547,921,014 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq31829 109 8e-19 seq18524 98.7 1e-15 >seq31829 Length=2224 Score = 109 bits (120), Expect = 8e-19 Identities = 224/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| || || || || | |||| |||||||| || ||||||||||| || || Sbjct 2115 ATCCTTAATGTAAGTGTCGATGAGAAGAGAGTACATTTCAGAGTGAATGTTTTCGATGGC 2056 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| | |||||||| || | | || | ||||| ||||| || || ||||| Sbjct 2055 AATCTGCATACCGTAAAAGCAGCGTATCTCCGGTATCTGAACCTCCTGACTGAAACGTTC 1996 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 | ||||||||| || || ||||| || ||||| || |||||||| || | || Sbjct 1995 AAGCAAATTCTCTAGTACGATCCCATCGCTTGCAGCGAAGAATGCCAAGACGTAGGAGAT 1936 Query 47070 AAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 ||||| || | | || | |||||| | || ||||| | ||| || Sbjct 1935 AAAATGACGCTCGCCCACTTTAAGACTGCTCCAGTGCGACAAGTCCTTTGAAAGATCAAC 1876 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||||| |||||||||| || || | ||||| || || | | ||||| || | || Sbjct 1875 CTCTTCTACTGTCCAGAAGGAGGCAACGGCTTTCTTGTAAAATTGCCATACGTCGTGGTA 1816 Query 47190 TTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| || ||||| | ||||| | || |||||| Sbjct 1815 TTGTATTGGAAACAAGACAAAACGATGTGGATT 1783 >seq18524 Length=2666 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || || || ||||| |||| || || | ||| ||| |||| ||| ||||| || || Sbjct 730 CCAATACCGCCTGCATTTTTTGATATGATAGCGCAGTCCTTCAGTGTATCATATATACCT 671 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 || || |||||| || | || | |||||||| || || |||||||| | | | ||| Sbjct 670 TCAATGCTATCACCCTTAATTGTGAGAAGAAAGCAACTTGACATTTGGGGTTTAGGAGTA 611 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || || |||| || || || |||||||||||||| ||||| || | ||||||||| Sbjct 610 CCGCTGTTGAACAGAGTGGGCGAGGCATGAGTGAACCACTTTTCGGACATCAGATTGTAT 551 Query 77057 GT 77058 || Sbjct 550 GT 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708669822476160