Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq104533 102 2e-16 seq103538 98.7 2e-15 seq21895 98.7 2e-15 seq137790 95.1 3e-14 seq43682 95.1 3e-14 seq90354 89.7 1e-12 seq36161 89.7 1e-12 seq23839 89.7 1e-12 seq71160 86.0 1e-11 seq116723 84.2 5e-11 >seq104533 Length=1048 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||| Sbjct 682 TTGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGA 741 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 742 GCCCCACGTTGGGC 755 >seq103538 Length=1070 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 676 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 735 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 736 CCCACGTTGGGC 747 >seq21895 Length=6719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 2942 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3001 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3002 CCCACGTTGGGC 3013 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 2561 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2620 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 2621 CCCACTTTGGGC 2632 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||| ||| ||||||| Sbjct 5250 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCCTGGTTTCGAGC 5309 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5310 CCCACGTTGGGC 5321 >seq137790 Length=532 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| | ||||||||||||||||| | ||||| ||||||| | |||||||||| ||| Sbjct 134 TTGCCCGGCCAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTCCGA 75 Query 165768 GCCCCACGATGGGCA 165782 |||||||| |||||| Sbjct 74 GCCCCACGTTGGGCA 60 >seq43682 Length=3794 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 2982 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2923 Query 165770 CCCACGATGGGC 165781 |||||| |||| Sbjct 2922 CCCACGTCGGGC 2911 >seq90354 Length=1404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | ||||| |||||||||| Sbjct 448 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGAGGGTTCGAGC 389 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 388 TCCACGTTGGGC 377 >seq36161 Length=4528 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||| | ||||||| | ||||||||| |||||| Sbjct 2503 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGAGTCTTAATCTCGGGGTCGTGGGCTCGAGC 2444 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2443 CCCACGTTGGGC 2432 >seq23839 Length=6324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||| |||||||||||||| | ||||| ||||||| | ||||||||||| |||| Sbjct 2461 GCCCGGCTAGATCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTTGAGC 2520 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2521 CCCACGTTGGGC 2532 >seq71160 Length=2098 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||| ||| | |||| ||||||||||| Sbjct 679 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTATTCTCGGGGTCATGGGTTCGAGC 738 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 739 CCCACGTTGGGC 750 >seq116723 Length=813 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| |||| || | |||||||||||||||| Sbjct 738 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAAACTCGGGGTCGTGGGTTCGAGC 679 Query 165770 CCCACG 165775 ||| || Sbjct 678 CCCGCG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055922543509220