Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq36919 122 1e-22 seq38847 89.7 6e-13 >seq36919 Length=4449 Score = 122 bits (134), Expect = 1e-22 Identities = 214/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || |||| ||| || || || | ||| |||||| || |||||||| ||||| || || Sbjct 2230 TCCTTAATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCA 2171 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC--AAAATCGTT 24513 || || || || |||||||| | || || | |||||||||||| || || ||| Sbjct 2170 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCG-- 2113 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | | ||||||||| ||||||||||| || || |||||||| || | || | | | Sbjct 2112 CCACAAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAA 2053 Query 24574 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 24633 | || | || ||| | |||| | ||| ||| | ||||| | | || | Sbjct 2052 TGAAGTGCTTCTCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAA 1993 Query 24634 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 24693 ||||||| || ||||||||||| ||| | || || || || | | |||||| ||||||| Sbjct 1992 CTTCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGAT 1933 Query 24694 ATTGAATTGG 24703 | || || || Sbjct 1932 ACTGGATAGG 1923 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 23847 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 23906 ||||||||||| |||||||| || || || ||||| || ||||| | ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 23907 ATGAAATCGGATGGATTGGT 23926 ||||||||| |||| || || Sbjct 2891 ATGAAATCGAATGGGTTCGT 2872 >seq38847 Length=4243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| ||| | || || | ||| |||||| || |||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || || || || |||||||| | || | | ||||||| ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | | ||||||||| ||||||||||| || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592680405273120