Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq58369 141 1e-28 seq36919 141 1e-28 seq73473 122 9e-23 seq7124 109 6e-19 seq79732 107 2e-18 seq36647 91.5 2e-13 seq36821 89.7 5e-13 seq8609 89.7 5e-13 >seq58369 Length=2743 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| |||||||| || ||| | || ||||||||||| || | || |||||| ||| Sbjct 955 AATGCAGATATTCGTTAAGACGTTGACAGGCAAAACCATTACTCTGGAGGTCGAACCCAG 1014 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||| | |||| || || | || |||||||| |||||| ||||||| Sbjct 1015 TGACTCCATTGAAAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 1074 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||| || | ||| || ||||| || || || | ||||| ||| ||||||||| Sbjct 1075 ACAACGACTGATATTCGCCGGTAAACAACTAGAAGATGGCCGCACGCTCTCCGACTACAA 1134 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || ||| | || |||||||| ||| |||| Sbjct 1135 TATCCAAAAAGAGTCTACTCTGCATCTGGTGCTGCG 1170 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || ||||| || || || || || || || || | || |||||| ||| Sbjct 728 ATGCAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGT 787 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| |||||| || || | || || || || |||||| ||||||| Sbjct 788 GACTCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAA 847 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| || ||||| || || || | |||||||| ||||||||| Sbjct 848 CAGCGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAAC 907 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| | || || ||||| || ||||| Sbjct 908 ATCCAAAAGGAATCGACTCTCCATCTGGTCTTGCG 942 Score = 109 bits (120), Expect = 6e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || |||||||| ||||| | || ||||| | | Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 40750 GAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||| | || | || | |||| | || || | ||||||||||| || || | ||| Sbjct 104 GACTCGATCGAG--AATG-TCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGAC 160 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || ||||| || | ||| |||||||| || || || | |||||||||| ||||| Sbjct 161 CAACAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTAT 220 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || |||||| |||| |||||||| || Sbjct 221 AACATTCAAAAGGAGTCCACTCTGCATCTGGT 252 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || || ||| | || |||||| ||| Sbjct 272 ATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGT 331 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | |||| ||||||| || || ||||| ||||| ||||||| Sbjct 332 GACTCAATTGAGAACG-TGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCA 390 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| || | ||| ||||| || || || || | || || || ||||||||| Sbjct 391 ACAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAA 450 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || ||||| | || || ||||| || ||||| Sbjct 451 CATTCAAAAGGAATCAACCCTACATCTGGTCTTGCG 486 >seq36919 Length=4449 Score = 141 bits (156), Expect = 1e-28 Identities = 236/341 (69%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||| ||| |||||||| | ||||||||||| | || || || || | || Sbjct 1881 GAGCCGCTTCTGGTTGAGAACCCGAGACGGTTCGTGATCATGCCTATCCAGTATCATGAT 1940 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| | ||||| || || | ||| || || |||||||| || || || ||| || Sbjct 1941 ATCTGGCAGTTTTACAAGAAAGCGGTGGCTTCATTTTGGACCGTTGAAGAAGTTGACTTG 2000 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 | || ||| | |||||||| | || ||| |||| || ||||| || Sbjct 2001 GCGAAAGACCTTGGTGACTGGGAATCTCTAAAGGACGGCGAGAAGCACTTCATTTCATAC 2060 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815 || || |||||||| ||||| |||||||| || || || || ||||| || | | ||| Sbjct 2061 GTCCTTGCCTTTTTTGCCGCAAGCGACGGAATAGTAAATGAAAATCTTGTGGCGAACTTC 2120 Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875 ||| || || ||| | | || || || || ||||| ||||| ||||| || || || Sbjct 2121 AGTCAAGAAGTACAGATCCCAGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCAATCGAA 2180 Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 || | || || || |||||||| || ||||||||||| Sbjct 2181 AATATTCATTCAGAGATGTATTCCCTTCTTATCGACACGTA 2221 >seq73473 Length=1996 Score = 122 bits (134), Expect = 9e-23 Identities = 159/217 (73%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || || || || ||| | || |||||||| || || | || || ||| | | || Sbjct 1405 TGCAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGCG 1464 Query 40751 AC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | || | || | |||||| || ||| ||||||||||| ||||| | |||| Sbjct 1465 ACTCGATCGAG--AATG-TCAAGGCTAAGATTTAGGACAAAGAGGGAATCCCACCAGACC 1521 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||||||| |||| | ||| || ||||| || || |||| ||||||||| || |||| Sbjct 1522 AGCAACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACA 1581 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || |||||| | || |||| Sbjct 1582 ACATCCAGAAGGAGTCTACACTGCATTTGGTCCTGCG 1618 >seq7124 Length=12460 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || ||| | | Sbjct 7108 ATGCAAATCTTTGTGAAGACACTGACTGGCAAGACCATCACGTTGGAGGTGGAACCGAGT 7167 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| | |||| ||| |||| || || || ||||| || | |||||| Sbjct 7168 GACTCTATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCTCCAGACCAG 7227 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| |||| || || ||| |||||||| Sbjct 7228 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGTCGTACACTCTCGGACTACAAT 7287 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || ||||| Sbjct 7288 ATCCAGAAGGAGTCGACCCTGCA 7310 >seq79732 Length=1757 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || ||||| || || || || || || ||| |||| || || | | Sbjct 1367 ATGCAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1308 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| | |||| || |||| ||||||||||| ||||| | |||||| Sbjct 1307 GACTCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCAG 1248 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||||||||| || || | ||||| || || || || Sbjct 1247 CAACGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAAT 1188 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| |||| || || || || Sbjct 1187 ATCCAAAAGGAGTCCACCCTTCACCTGGT 1159 >seq36647 Length=4477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || | | Sbjct 4139 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGTTGGAGGTGGAGCCGAGT 4198 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | ||| | |||| ||| |||| || || || || || || |||||||| Sbjct 4199 GACTCGATCGAAAATGTGAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAG 4258 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||| |||| || | || || || |||||||| Sbjct 4259 CAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCTGACTACAAT 4318 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || ||||| Sbjct 4319 ATCCAGAAGGAGTCGACTCTGCA 4341 >seq36821 Length=4459 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || ||||| || || || | || || || ||| | Sbjct 1340 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 1399 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| || || | ||||| || || |||||| | ||||| Sbjct 1400 GACTCGATTGAGAATGTT-AAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 1458 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| |||| ||| || ||||| || || || | ||||| ||| || ||||| Sbjct 1459 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 1518 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || ||| | || ||||||| || ||||| Sbjct 1519 CATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCG 1554 >seq8609 Length=11408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || ||||| || || || | || || || ||| | Sbjct 10223 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 10282 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | | |||| || || | ||||| || || |||||| | ||||| Sbjct 10283 GACTCGATTGAGAATGTT-AAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 10341 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| |||| ||| || ||||| || || || | ||||| ||| || ||||| Sbjct 10342 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 10401 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || ||| | || ||||||| || ||||| Sbjct 10402 CATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCG 10437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514315672969440