Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq58369 131 1e-25 seq36821 105 6e-18 seq8609 105 6e-18 seq36647 104 2e-17 seq73473 87.8 2e-12 >seq58369 Length=2743 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| || | ||||||||||||||||| |||||||| Sbjct 726 CCACCGCGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAG 667 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||||||| ||||| |||||| ||||||| | |||||||| || || Sbjct 666 AGCGTACGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGG 607 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || |||||| ||||| ||| || | || | | ||| || |||||| Sbjct 606 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACC 547 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||| || || ||||| || || |||||||||||||| Sbjct 546 TCCAGGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||||||||| || || | |||||| ||| ||||| ||||| || Sbjct 240 GTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCGAGTTGTTTGCCG 181 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || ||||| || || || ||||| ||||| |||||| || || ||| Sbjct 180 GCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGGATCTTGGCTTTG 121 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| | ||| | ||||||||| | || | |||||||| |||| ||| Sbjct 120 ACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTGCCAGTCAAAGTC 61 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 60 TTAACGAAGATCTGCAT 44 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||| || | || || || |||||||||||||| ||| | ||| || ||| Sbjct 484 CAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATC 425 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || || || ||| | || || ||||| || || || || || |||||||| || Sbjct 424 TTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTATC 365 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| || || | || | | ||| || |||||||| | ||| | ||| Sbjct 364 TTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAATCGT 305 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || |||||||| |||||| Sbjct 304 CTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | |||||||||||||| || ||||| ||| | ||||| ||| Sbjct 1168 CAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATC 1109 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || ||||| || ||| | || || || || || || || || || ||||| || || Sbjct 1108 TTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATC 1049 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | ||| | || ||| || |||||||| | || | || Sbjct 1048 TTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAATGGT 989 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| |||| || || || || |||||||| Sbjct 988 TTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 >seq36821 Length=4459 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||| || | ||||||||||||||| ||||||||||| | ||||| ||| Sbjct 1552 CAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATC 1493 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| ||||| || ||| |||| || | ||| || || || || || || |||||||| Sbjct 1492 CTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTC 1433 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || ||||| | || | | ||| || ||| ||||| | || | || Sbjct 1432 CTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGT 1373 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||| ||||| ||||| |||||||| Sbjct 1372 CTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||| || | ||||||||||||||| ||||||||||| | ||||| ||| Sbjct 10435 CAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATC 10376 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| ||||| || ||| |||| || | ||| || || || || || || |||||||| Sbjct 10375 CTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTC 10316 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || ||||| | || | | ||| || ||| ||||| | || | || Sbjct 10315 CTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGT 10256 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| |||| ||||| ||||| |||||||| Sbjct 10255 CTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq36647 Length=4477 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || || ||||| || || || || ||| || Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || |||||| |||| ||||||||||| || ||||| || || ||||| || | Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGA 4228 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | ||||| | ||| | ||| ||||| | || | || ||| Sbjct 4227 ATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTG 4168 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 || ||||| || || |||||||||||||| || Sbjct 4167 CCAGTCAGGGTCTTCACAAAAATCTGCATAGC 4136 >seq73473 Length=1996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||||||| || || ||||||||||| | ||||| || ||| Sbjct 1612 ACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCTTCG 1553 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || ||| | |||| || ||||| || || || || ||||| ||||| | Sbjct 1552 AGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTAA 1493 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| | ||| | || ||||| | || | |||||| Sbjct 1492 ATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATAGTTTTG 1433 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCA 118737 || |||| || || ||||||||||||| Sbjct 1432 CCAGTCAACGTCTTCACAAAAATCTGCA 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433088622411448