Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7124 125 8e-24 seq36647 111 2e-19 seq58369 104 3e-17 seq88470 93.3 5e-14 seq101828 89.7 6e-13 seq51983 89.7 6e-13 seq34058 86.0 7e-12 seq14240 86.0 7e-12 seq79134 84.2 2e-11 >seq7124 Length=12460 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || ||||| ||||| |||| || |||||| || |||||||| || | Sbjct 7334 CCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAG 7275 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| ||||| || || || ||||||||||| | || Sbjct 7274 AGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGA 7215 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||| ||| ||| | |||| || | | | | | ||| |||| |||||| Sbjct 7214 ATGCCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCAC 7156 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||| ||||| || || ||||| |||||||||||||| Sbjct 7155 CTCCAACGTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || ||| || || |||||||| || | || || || | Sbjct 7551 ACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACC 7492 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||||||||| || || || ||||| || || | || | || ||||| Sbjct 7491 GTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTT 7432 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | |||| || | || | | || |||||||| |||||| || | || | Sbjct 7431 GTCC-TGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTA 7373 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || |||||||| |||||||| ||||| Sbjct 7372 TGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq36647 Length=4477 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||| || |||||||| |||| ||| || || | || || Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| |||||||| || || ||||||||||| | || | | ||||| ||| || Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCC-TG 4229 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | |||| || | | | | || ||| |||| ||||| || | ||||||||| || Sbjct 4228 AATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTT 4169 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || ||||| ||||| || ||||| Sbjct 4168 GCCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq58369 Length=2743 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||||| || ||| ||||||||||||||||||| || || || | Sbjct 714 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA 655 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || ||||||||||| ||||||| ||||| || | || | || || ||| Sbjct 654 TCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTG 595 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || |||||| ||||| || | | | ||| || | ||| || || | || || Sbjct 594 TCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATC 535 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| ||||| || ||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||||| ||| |||||||||||| || || |||| || || ||| | || || Sbjct 252 ACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCG 193 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || || ||||| || |||||||| ||||| | || | | ||| ||||| | Sbjct 192 AGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGG 133 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || ||||| || | | || ||| || | || || || | ||||| |||||| Sbjct 132 ATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTG 73 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || ||||| ||||| Sbjct 72 CCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||| ||| | || ||||||||||| ||||| || | ||||| || | Sbjct 487 ACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACC 428 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| || ||||| || |||||||| ||||| | || | | |||||| Sbjct 427 ATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTT 368 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 | | ||| |||| | || | || | | | ||| || | ||| || || | || | Sbjct 367 AT-CTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAA 309 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| ||||| |||||||| Sbjct 308 TCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||| ||| | || |||||||| || ||||| |||| || || || | Sbjct 943 ACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCC 884 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || ||||| ||||| || |||||||| ||||| | || | | ||||| Sbjct 883 ATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTT 824 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| || |||| | | | || ||| || | ||| || || | || || Sbjct 823 ATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAAT 764 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || |||||||||||||||||||| Sbjct 763 CGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 ||| ||| || | | ||||| ||||| ||||| || ||| ||||| |||||||| | Sbjct 1187 ATTATCCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGT 1128 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | | || || || | || ||||| || ||||| |||||||| ||||| || ||||| | Sbjct 1127 CGGAGAGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCG 1068 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 || | | ||| || || ||| || || | | | | | ||| || | || Sbjct 1067 GGGGGATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTT 1008 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || | || ||||||||||| || | |||||| || || || |||||| Sbjct 1007 CGACCTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 >seq88470 Length=1461 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||| |||| || | |||||| |||||| ||||| || ||||||||||||| |||| Sbjct 587 AAAAGTTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 528 Query 60117 TCACCACTATACTACCGAGGA 60137 |||||||||||||| || ||| Sbjct 527 TCACCACTATACTATCGCGGA 507 >seq101828 Length=1109 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 60047 AACGTTTA--TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 |||||| | | |||| || |||| || | |||||| |||||| ||||| || |||||| Sbjct 469 AACGTTAAGTTCAAAAGTTGCCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGAC 410 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||| |||||||||||||||||| || ||| Sbjct 409 AGGCGGAGATACTCACCACTATACTATCGCGGA 377 >seq51983 Length=3145 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 2197 CTCCGCGGCCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 2138 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 2137 TACTATCGCGGA 2126 >seq34058 Length=4766 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 1591 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 1650 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 1651 TACTATCGTGGA 1662 >seq14240 Length=8754 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 3452 CTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 3393 Query 60126 TACTACCGAGGA 60137 ||||| || ||| Sbjct 3392 TACTATCGCGGA 3381 >seq79134 Length=1778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| | ||| || ||||||||| ||| ||||||||||||| Sbjct 773 CTCCACGGCCGGGAATTGAACCCAG-TCTTCCACGTGACAGGTGGAGATACTCACCACTA 715 Query 60126 TACTACCGAGGAT 60138 |||||||| |||| Sbjct 714 TACTACCGCGGAT 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570814817770320