Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq36647 131 1e-25 seq7124 125 5e-24 seq58369 93.3 3e-14 >seq36647 Length=4477 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| || ||||| || |||||||| ||| Sbjct 4365 CCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGAC 4306 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || |||||||||||||| ||||| || || ||||||||||| || Sbjct 4305 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 4246 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || |||||| ||| | || | ||||| || ||| || || Sbjct 4245 ATACCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACC 4186 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 |||| ||||||||| ||||| || || || |||||||| |||||||| || Sbjct 4185 TCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATAGC 4136 >seq7124 Length=12460 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| |||||||| || |||||||| || Sbjct 7562 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAG 7503 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| ||||||||||| || || || || || ||||| || || || Sbjct 7502 AGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGA 7443 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||||| ||||| || | ||||| ||| ||| ||| || Sbjct 7442 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACC 7383 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| ||||| || || || ||||||||||||||||| Sbjct 7382 TCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||| |||| ||| | || || ||||| || |||||||| || Sbjct 7334 CCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAG 7275 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| || || || || ||||||||||| || Sbjct 7274 AGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGA 7215 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || |||||| ||| | || | || || || ||| ||| || Sbjct 7214 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACC 7155 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 |||| ||||||||| ||||| || || || ||||||||||| |||||||| Sbjct 7154 TCCAACGTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCATCGC 7105 >seq58369 Length=2743 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 ||||||| || || | ||||||||| || | |||| ||||| || || |||||||||| Sbjct 1184 ATCCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGG 1125 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 | ||| ||| | || || | || || || ||||| || || || || ||||| || Sbjct 1124 AGAGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGG 1065 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||| || || ||||| ||| | || | || || || | | ||||| Sbjct 1064 GGATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGA 1005 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || ||||||||||| || | || || || || |||||||| Sbjct 1004 CCTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || ||||| || | ||| || || || ||||| ||||| || Sbjct 270 CCACCTCGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAG 211 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | || ||||| |||||||| || ||||| ||||| || Sbjct 210 AGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGT 151 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| ||||| ||||| | || | ||||| || | | ||||| Sbjct 150 ATCCCCTCTTTGTCTTGGATCTTG-GCTTTGACATTCTCGATCGAGTCACTAGGCTCGAC 92 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| |||||||| || | ||| || || |||||||||||| Sbjct 91 CTCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCATC 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322519600792640