Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq36919 114 1e-20 >seq36919 Length=4449 Score = 114 bits (126), Expect = 1e-20 Identities = 196/278 (71%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 |||||| || || || || | |||||| |||||||||||||| || ||||| ||||| Sbjct 2225 AATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTG 2166 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGC-T 16621 || ||||| || || | ||||| | || |||||||| || | || ||| | Sbjct 2165 GAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAA---GTTCGCCAC 2109 Query 16622 AAG-TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA 16680 ||| ||||| || |||||||| ||||| || |||||||| ||||| | || | ||| || Sbjct 2108 AAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATGAA 2049 Query 16681 AtttttttCGTTATC--TGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACC 16738 | || ||| || | | || || ||||||| || ||||| | || || || Sbjct 2048 GTGCTTCTCGCCGTCCTTTAGAGATT--CCCAGTCACCAAGGTCTTTCGCCAAGTCAACT 1991 Query 16739 TCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||||| || |||||||| ||||| || || || || || Sbjct 1990 TCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTA 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461700904268400