Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq36919 116 3e-21 seq36647 102 7e-17 seq7124 98.7 9e-16 seq58369 87.8 2e-12 >seq36919 Length=4449 Score = 116 bits (128), Expect = 3e-21 Identities = 244/360 (68%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 57505 CCGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATC 57564 ||||||| || ||| || ||||| || | | || || || | || || | |||| Sbjct 1876 CCGATGAGCCGCTTCTGGTTGAGAACCCGAGACGGTTCGTGATCATGCCTATCCAGTATC 1935 Query 57565 CAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAG 57624 || || ||| | | ||||| || || | || || ||||||||||| |||||||| | Sbjct 1936 ATGATATCTGGCAGTTTTACAAGAAAGCGGTGGCTTCATTTTGGACCGTTGAAGAAGTTG 1995 Query 57625 ACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAA--ATTTTAT 57682 || || | || || || | || ||||| || || || || | | ||||| | || || Sbjct 1996 ACTTGGCGAAAGACCTTGGTGACTGGGAATCTCTAAAGGA--CGGCGAGAAGCACTTCAT 2053 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 | | |||| | || ||||| |||||| ||| || || || || || ||| | || | Sbjct 2054 TTCATACGTCCTTGCCTTTTTTGCCGCAAGCGACGGAATAGTAAATGAAAATCTTGTGG- 2112 Query 57743 AAGATTTTCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 || |||| |||||||| || | | || || | || || || || || || | Sbjct 2113 -CGAACTTCAGTCAAGAAGTACAGATCCCAGAAGCCCGCTGTTTCTATGGCTTCCAGATT 2171 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 || || ||||| | |||||||| |||||||| || || ||||| ||||| | |||||| Sbjct 2172 GCAATCGAAAATATTCATTCAGAGATGTATTCCCTTCTTATCGACACGTATATTAAGGAC 2231 >seq36647 Length=4477 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 4139 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACGTTGGAGGTGGAGCCGAGT 4198 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||||| || || || ||| | ||| |||||||| | || || ||||| Sbjct 4199 GACTCGATCGAAAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGTATTCCTCCGGACCA 4257 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||||||||||| || || || || || Sbjct 4258 GCAGCGTCTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACGCTGTCTGACTACAA 4317 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||||| || ||||||| Sbjct 4318 TATCCAGAAGGAGTCGACTCTGCACTTGGTACT 4350 >seq7124 Length=12460 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| ||||| || ||||| | || || |||||| Sbjct 7108 ATGCAAATCTTTGTGAAGACACTGACTGGCAAGACCATCACGTTGGAGGTGGAACCGAGT 7167 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||||| || || || ||| | ||| ||||||||| | || || ||||| Sbjct 7168 GACTCTATCGAAAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGCATTCCTCCAGACCA 7226 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| |||| ||| | || | || || || Sbjct 7227 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGACGGTCGTACACTCTCGGACTACAA 7286 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || ||||||| Sbjct 7287 TATCCAGAAGGAGTCGACCCTGCACTTGGTACT 7319 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||| ||||| || || || | || || |||||| Sbjct 7335 CATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATAACTTTGGAGGTGGAACCGAG 7394 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| | || || || ||| | ||||||||||||| | || || || | Sbjct 7395 CGACTCGATCGAGAATGTAAAGGCAAAGATTCA-GGACAAGGAAGGCATTCCTCCAGATC 7453 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTA 31368 | ||||| || || || ||||| || |||||||| ||| || ||| | | || || Sbjct 7454 AACAGCGCCTGATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGCACACTCTCA--GACTA 7511 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 || || || ||||| |||||||| || |||| || | ||| | || ||| || Sbjct 7512 CAATATCCAGAAAGAGTCGACTCTGCACTTGGTGCTCCGTCTGCGTGGTGGTTGA 7566 >seq58369 Length=2743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| |||||||| ||||| | || || || || Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | |||||| | || ||||| || || | || || ||||| Sbjct 104 GACTCGATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGACCAA 163 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| |||||||| | ||||| || | || |||||| Sbjct 164 CAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAAC 223 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || ||||| |||||||| || || || Sbjct 224 ATTCAAAAGGAGTCCACTCTGCATCTGGTCCTCAGGCT 261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||| || || ||||| ||| | || || ||||| Sbjct 500 ATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGT 559 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | || | |||||| | ||| ||||| |||||| | || || || ||| Sbjct 560 GACTCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCAG 619 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 || | || || |||||||| ||||| | || || | || | || | | |||| Sbjct 620 CAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACG-CTCTCTG--ATTAC 676 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| || ||||| |||||||| || Sbjct 677 AATATTCAAAAAGAGTCTACTCTGCATCTGGTGCT 711 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || |||||||| ||||| || || ||||| || | || || ||||| Sbjct 727 CATGCAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAG 786 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| |||||| ||||| | || || |||||||| | || || ||||| Sbjct 787 TGACTCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCA 846 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || ||||| || ||||| | ||||| || | || || || Sbjct 847 ACAGCGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAA 906 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| ||||| ||||||||||| |||||||| Sbjct 907 CATCCAAAAGGAATCGACTCTCCATCTGGT 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444984670608480