Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq38847 89.7 6e-13 seq36919 82.4 1e-10 >seq38847 Length=4243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||| | ||||| | ||| |||||| || |||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||| || || |||||||| | || | | ||||| | ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | | ||||||||| |||||||| || || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 >seq36919 Length=4449 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 ||||||||||| |||||||| || || || ||||| || ||||||| ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 33354 ATGAAATCAAACGGATTGGT 33373 |||||||| || || || || Sbjct 2891 ATGAAATCGAATGGGTTCGT 2872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628713104620320