Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq31935 138 1e-27 seq36919 132 5e-26 >seq31935 Length=5035 Score = 138 bits (152), Expect = 1e-27 Identities = 375/565 (66%), Gaps = 12/565 (2%) Strand=Plus/Minus Query 37907 TTTTCTTT--GTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCA 37964 ||||| || | |||||||| | | || || || | ||| || | ||||| |||| | Sbjct 1913 TTTTCCTTCCGATTCGTATTTTGTGTACAACTTTTCAAATTCTTCACCCCAACAATCGAA 1854 Query 37965 TAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT---ACGCG 38021 | |||||||| ||| ||| ||| || | ||| ||| || || ||| ||||| Sbjct 1853 AAGACCTGGACACTCGTGAGGATCCATAAGTGTCCA--CTTG-TCGTTGTCTCGCACGCG 1797 Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 | ||||||||| ||||| ||||| | || | || | ||| | |||| ||||| Sbjct 1796 TCGCATAAATAAGTCAGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCTAGTCTCTTC 1737 Query 38082 GTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTA 38140 | || || || | || ||| || || | | || || | ||||||||| || | Sbjct 1736 GGCGCCAGTGTTTTTGCGTA-GCTCTACGAACTGCAGAATGTCTGGGTGCCATGGCTCCA 1678 Query 38141 TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGT 38200 ||||||| | || ||||||| || | || || || | | || | |||||| Sbjct 1677 AGTAAATCGCGAAGGCACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGT 1618 Query 38201 TATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATAT 38260 | || | | | | ||| || || | ||||| || | || || | || | |||| Sbjct 1617 TGTTGAAGACGCGGAGCATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCTATAA 1558 Query 38261 AAGTACCCTTAGCTCGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGAT 38319 |||||||||| ||| ||| | | | || | || |||||||| |||| ||| ||| Sbjct 1557 AAGTACCCTTGCTTCGGATAC-AGTGAACGTTGAGACCGATTCCACCAGCATTTTTCGAT 1499 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 || | || || || || || |||||| | || || || || ||||| ||||| |||| Sbjct 1498 ATAAGCGCACACTGCTTCAATGTATCATAAATGCCCTCAATGCTGTCGTCCTTCATTGTG 1439 Query 38380 AGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGAT 38439 || | ||||||| ||||| || |||| || || ||||||||||| | ||| |||||| Sbjct 1438 AGAAGGTAACAACTGGACATCTGTGGCATAGGGGTCCCGGCGTTAAAAAGTGTGGGAGAT 1379 Query 38440 GCATGTATGAACCATTTTTCCGACA 38464 || || | ||||| || | |||| Sbjct 1378 GCGTGAGTAAACCACTTCCCGGACA 1354 >seq36919 Length=4449 Score = 132 bits (146), Expect = 5e-26 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||| ||||||||||||||||| || || || || || ||||||||||| || || || Sbjct 2201 ATACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAGCCATAGAAACAGCGGGCTTC 2142 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || |||||| || | || | || | | ||| |||||||| || || || || Sbjct 2141 TGGGATCTGTACTTCTTGACTGAAGTTCGCCACAAGATTTTCATTTACTATTCCGTCGCT 2082 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099 | |||||||| || || | | | || |||| || ||| | | ||| || Sbjct 2081 TGCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTCTCGCCGTCCTTTAGAGATTC 2022 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 ||| ||| | | ||||| | || || |||||||||||||||||||| ||||| | Sbjct 2021 CCAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACGGTCCAAAATGAAGCCACCGC 1962 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACC 12212 || || || | | ||||||||||||||||| ||||| | || ||||||| Sbjct 1961 TTTCTTGTAAAACTGCCAGATATCATGATACTGGATAGGCATGATCACGAACC 1909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467703159771360