Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq36919 116 5e-21 seq38847 89.7 7e-13 >seq36919 Length=4449 Score = 116 bits (128), Expect = 5e-21 Identities = 213/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || |||| ||| || || || | ||| |||||| || |||||||| ||||| || || Sbjct 2230 TCCTTAATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCA 2171 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC--AAAATCGTT 36536 || || || || |||||||| | || || | |||||||||||| || || ||| Sbjct 2170 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCG-- 2113 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | | | ||||||||| ||||||||||| || || |||||||| || | || | | | Sbjct 2112 CCACAAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAA 2053 Query 36597 TAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 36656 | || | || ||| |||| | ||| ||| | ||||| | | || | Sbjct 2052 TGAAGTGCTTCTCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAA 1993 Query 36657 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 36716 ||||||| || ||||||||||| ||| | || || || || | | |||||| ||||||| Sbjct 1992 CTTCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGAT 1933 Query 36717 ATTGAATTGG 36726 | || || || Sbjct 1932 ACTGGATAGG 1923 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929 ||||||||||| |||||||| || || || ||||| || ||||| | ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 35930 ATGAAATCGAATGGATT 35946 |||||||||||||| || Sbjct 2891 ATGAAATCGAATGGGTT 2875 >seq38847 Length=4243 Score = 89.7 bits (98), Expect = 7e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| ||| | || || | ||| |||||| || |||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 || || || || |||||||| | || | | ||||||| ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | | ||||||||| ||||||||||| || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657018578814960