Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq58369 104 2e-17 seq36821 89.7 5e-13 seq8609 89.7 5e-13 seq36647 82.4 8e-11 >seq58369 Length=2743 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||||||||| || ||||| | || | || ||||| ||||||||| Sbjct 696 GTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCCTCGAGTTGTTTACCA 637 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||||||| || || |||||||||||||| |||||| ||| Sbjct 636 GCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTG 577 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||| |||| || ||||| | ||| | |||||| || |||| || Sbjct 576 ACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCTTACCAGTCAGGGTC 517 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 516 TTCACAAAAATCTGCAT 500 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || | || | |||||||||||||| || || || ||| Sbjct 1182 CCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAG 1123 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || |||||||| || | ||||| ||||| || || || || Sbjct 1122 AGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGG 1063 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || ||| || || | | ||| | | ||| |||| || ||| Sbjct 1062 ATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACC 1003 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| |||||||| || |||||||| ||||| Sbjct 1002 TCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| |||||||||||||| || | |||| | |||||||| ||||| || Sbjct 240 GTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCGAGTTGTTTGCCG 181 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | ||||| || || || || || ||||| || |||||||| ||| || ||| Sbjct 180 GCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGGATCTTGGCTTTG 121 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||| | ||||| ||||| | || | || ||||| ||||| || Sbjct 120 ACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTGCCAGTCAAAGTC 61 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 60 TTAACGAAGATCTGCAT 44 >seq36821 Length=4459 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | |||||||||||||| ||||| ||||| Sbjct 1566 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 1507 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||| |||||||| || |||| || | || || || || || Sbjct 1506 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 1447 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | | |||| ||||||| ||| Sbjct 1446 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 1387 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| ||||| ||||| || || || ||||| Sbjct 1386 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | || | |||||||||||||| ||||| ||||| Sbjct 10449 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 10390 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || ||||| |||||||| || |||| || | || || || || || Sbjct 10389 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 10330 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | | |||| ||||||| ||| Sbjct 10329 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 10270 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| ||||| ||||| || || || ||||| Sbjct 10269 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq36647 Length=4477 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || || || || || Sbjct 4366 GCCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGA 4307 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| | ||| || ||||| |||||||||| ||||| || ||||| Sbjct 4306 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 4247 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| | |||| || | | ||| | | ||| | ||||||| Sbjct 4246 AATACCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCA 4188 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 |||| | || | |||||||| |||| || || || || || |||||||| Sbjct 4187 CCTCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATAGC 4136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495194064964800