Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq36919 140 5e-28 seq38847 95.1 2e-14 >seq36919 Length=4449 Score = 140 bits (154), Expect = 5e-28 Identities = 346/528 (66%), Gaps = 38/528 (7%) Strand=Plus/Minus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 ||| || |||||||| || |||||||| ||||| |||||||||| || || || || || Sbjct 2448 CTTCTTCAGCCAAAAGATAGACGCAAACGACCCGGAAAAGAAGACCCCCTCCACAGCAGC 2389 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACTTTTGAGCCCA 50153 |||||| || || | ||| | || || | |||| ||||| || | ||||| Sbjct 2388 AAAGGCTACCAGACGCTCCGGAAAAGAGGACTTTGAGTCACCAATCCATTTGAGTGCCCA 2329 Query 50154 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 50213 || ||||| || || |||||||| | || | | ||||| || || ||| | Sbjct 2328 GTCAGCCTTTTTCTTCACACAAGGAAGGGTCTGCACCGCATTGAACAGGAAGTCACTAAA 2269 Query 50214 ---------------------ATTAC-------TA---TCTTTAACATAAGTATCGATCA 50242 ||||| || || |||| ||| || ||||| | Sbjct 2268 CACGAAATAAGAATGGGAGAAATTACCGTTCGATAGGGTCCTTAATATACGTGTCGATAA 2209 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 ||| |||||| || |||||||| ||||| || || ||||| || || |||||||| | Sbjct 2208 GAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAGCCATAGAAACAGC 2149 Query 50303 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAA--TTTTCATTCACTAT 50360 || || | ||||| |||||| || || |||| | || |||||||| ||||| Sbjct 2148 GGGCTTCTGGGATCTGTACTTCTTGACTGAA--GTTCGCCACAAGATTTTCATTTACTAT 2091 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 |||||| || || |||||||| || | || | | || || || || ||| | | Sbjct 2090 TCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTCTCGCCGTCCTT 2031 Query 50421 TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 ||| | ||| ||| | ||||| | | || |||||||| || ||||||||||| Sbjct 2030 TAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACGGTCCAAAATGA 1971 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 50528 ||| | || || || || | | |||||| |||||||| ||||| || Sbjct 1970 AGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGATACTGGATAGG 1923 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 ||||||||||| |||||||| || || || ||||| || ||||||| ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 49732 ATGAAATCAAACGGATTGGTAACATTATAAAT 49763 |||||||| || || || || || |||||| Sbjct 2891 ATGAAATCGAATGGGTTCGTGTCACGATAAAT 2860 >seq38847 Length=4243 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| ||| | ||||| | ||| |||||| || |||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||| || || |||||||| | || | | ||||| | ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 | | ||||||||| ||||||||||| || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717009189962160