Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq58369 91.5 1e-13 seq79732 84.2 2e-11 seq36647 82.4 6e-11 >seq58369 Length=2743 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || || | |||| ||| | |||| ||||||||| | || || || || Sbjct 271 GCCACCTCGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGA 212 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | |||||||||||| ||||||| ||||||||| || | || Sbjct 211 GAGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGG 152 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| ||||||| | | | | ||| | || |||||| Sbjct 151 TATCCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGAC 92 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || | ||| || || || || ||||| Sbjct 91 CTCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 >seq79732 Length=1757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| | |||| || | ||| ||||||||| | ||| ||||| ||| Sbjct 1141 CCACCACGAAGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGAC 1200 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | ||||||||||| || || | || || || || | || Sbjct 1201 AGAGTGCGTCCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGG 1260 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || ||| ||| | || || | | | || ||| || ||| || Sbjct 1261 ATACCCTCTTTGTC-CTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAAC 1319 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | |||||||| || || ||||| ||||| ||||| || ||||| Sbjct 1320 CTCGAGGGTTATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq36647 Length=4477 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | ||| |||||| || | |||||| || || Sbjct 4366 GCCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGA 4307 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || ||||| || ||||| || || |||| ||||| || || | || Sbjct 4306 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 4247 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||| || || |||| || | || || | | | | ||| | | ||| | Sbjct 4246 AATACCTTCCTTATC-CTGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCA 4188 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| || || || || || || || ||||||||||| ||||| Sbjct 4187 CCTCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380717521625052