Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36919 138 2e-27 seq38847 98.7 1e-15 >seq36919 Length=4449 Score = 138 bits (152), Expect = 2e-27 Identities = 349/530 (66%), Gaps = 42/530 (8%) Strand=Plus/Minus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 ||| || |||||||| ||||||||||| || || |||||||||| || || || || || Sbjct 2448 CTTCTTCAGCCAAAAGATAGACGCAAACGACCCGGAAAAGAAGACCCCCTCCACAGCAGC 2389 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATGTATCCACTTTTGAGCCC 42257 |||||| | || | ||| | || || ||| |||| ||||| || | |||| Sbjct 2388 AAAGGCTACCAGACGCTCCGGAAAAGAGG-ACTTTGAGTCACCAATCCATTTGAGTGCCC 2330 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 42317 | || ||||| || || |||||||| | || | | ||||| || || ||| | Sbjct 2329 AGTCAGCCTTTTTCTTCACACAAGGAAGGGTCTGCACCGCATTGAACAGGAAGTCACTAA 2270 Query 42318 C---------------------ATTAC-------TA---TCTTTAACATATGTATCGATC 42346 ||||| || || |||| ||| || ||||| Sbjct 2269 ACACGAAATAAGAATGGGAGAAATTACCGTTCGATAGGGTCCTTAATATACGTGTCGATA 2210 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | ||| |||||| ||||||||||| ||||| || || ||||| || || |||||||| Sbjct 2209 AGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAGCCATAGAAACAG 2150 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTAC--AAAATCGTTCAGCTAAATTTTCGTTCACTA 42464 | ||| || | | |||||||||| || || ||| | | | |||||| || |||| Sbjct 2149 CGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCG--CCACAAGATTTTCATTTACTA 2092 Query 42465 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG 42524 ||||||| || || |||||||| || | || | | || || | || ||| ||| Sbjct 2091 TTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTCTCG-CCGTCC 2033 Query 42525 TTAATTTATT-CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAAT 42583 || | ||| ||| ||| | ||||| | | || |||||||| || ||||||||| Sbjct 2032 TTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACGGTCCAAAAT 1973 Query 42584 GATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 || || | || || || || | | ||||||||||||||| || || || Sbjct 1972 GAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGATACTGGATAGG 1923 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 ||||||||||| |||||||| || || || |||||||| ||||||| ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAT 41868 |||||||| || || || || || |||||| Sbjct 2891 ATGAAATCGAATGGGTTCGTGTCACGATAAAT 2860 >seq38847 Length=4243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| ||| | ||||| | ||| |||||| ||||||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 ||||| || || |||||||| | ||| | | | ||||| ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 42446 GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | |||||| || ||||||||||| || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669962239963440