Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq73473 109 4e-19 seq58369 95.1 9e-15 seq79732 82.4 6e-11 >seq73473 Length=1996 Score = 109 bits (120), Expect = 4e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || || || ||||||||||| || | | ||||||| Sbjct 1612 ACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCTTCG 1553 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | || || ||||| ||||| ||| ||||| |||||||| || Sbjct 1552 AGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTAA 1493 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || | |||||| ||| || |||| ||||| ||||| Sbjct 1492 ATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATAGTTTTG 1433 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCA 15362 || |||| || || |||||||| |||| Sbjct 1432 CCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq58369 Length=2743 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| ||||| || || ||||| |||||||| ||| |||| | | | ||| Sbjct 483 AAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCT 424 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| ||||| ||| | |||| || |||||||| ||| || || || || || Sbjct 423 TCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTATCT 364 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || | || || | || || ||| || || | |||||| || Sbjct 363 TGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAATCGTC 304 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || |||||||||||||| Sbjct 303 TTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || |||||||| || ||||| ||| || | | | ||||||| ||| Sbjct 1159 ATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATCTTCTAGTTG 1100 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| |||||| ||||||||||| || || || ||||| || || || Sbjct 1099 TTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATCTTGGATCTT 1040 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| |||| |||| || || ||| || || | ||||||||||| ||||| Sbjct 1039 AGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAATGGTTTTGCCTGT 980 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| Sbjct 979 CAACGTCTTAACGAATATCTGCAT 956 >seq79732 Length=1757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| || || ||||| ||| | | | || || | ||| Sbjct 1165 TGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCCTCAAGCTGT 1224 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | ||||| ||||| || || || |||||||| ||| ||| Sbjct 1225 TTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGAATCTTG 1284 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| |||| || | || | || || || | ||| || || || ||||| Sbjct 1285 GCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTCCCTGTT 1344 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| || ||||| Sbjct 1345 AGGGTTTTGACAAATATCTGCAT 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361559934006654