Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq58369 95.1 8e-15 seq7124 89.7 3e-13 seq73473 86.0 4e-12 seq36821 84.2 1e-11 seq8609 84.2 1e-11 >seq58369 Length=2743 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/223 (70%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT-T 33212 ||||| ||||| ||||| || ||||||||||| |||||||||||||| | | || Sbjct 715 CCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGA----GCGTAC 660 Query 33213 GGTCATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTT 33269 || ||||| | ||| || ||| || || | | |||||| |||| ||| ||||||| Sbjct 659 GGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTT 600 Query 33270 CTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCA 33326 |||| || | | | || ||| || | | ||| | ||| |||||| || |||| Sbjct 599 CTTTGTCTTGGATTTTGGC---TTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCA 543 Query 33327 GAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || ||||| || || || || || || || ||||| ||||| Sbjct 542 GGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| ||||| || ||||||||||| |||||||| || || | || | Sbjct 1170 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCA 1111 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||| || || ||||| | ||||| ||||||| ||| || || ||||| Sbjct 1110 TCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTA 1051 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| | ||| |||||| || |||||||| Sbjct 1050 TCTTGGATCTTAGCC---TTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTA 994 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | || || ||||| || ||||| Sbjct 993 ATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 >seq7124 Length=12460 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| |||| ||||||||||| || |||||||| || || | || | ||| || Sbjct 7545 CACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCCTC 7486 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| ||| ||| || | || || || || | || |||||||| || || Sbjct 7485 CAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCCTG 7426 Query 33280 AATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| ||||| | | |||| |||| | |||| || |||| |||||| || Sbjct 7425 AATCTTTGCC---TTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGT 7369 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || || |||||| Sbjct 7368 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCATG 7335 >seq73473 Length=1996 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||||||||| ||| ||||| || || || ||||||||||| | || | | Sbjct 1618 CGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCG 1559 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| || || || || || ||||||||||| | || || || ||||| Sbjct 1558 TCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTG 1499 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | |||| |||| | |||| ||| || ||||| Sbjct 1498 TCCTAAATCTTAGCC---TTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTA 1442 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCA 33368 || ||||| || || | || || || ||||| |||| Sbjct 1441 ATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq36821 Length=4459 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| ||||||||| ||||||||||| || ||||||||||| | || | Sbjct 1554 CGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCA 1495 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| || || || |||| | || ||||| | ||| || ||||| || Sbjct 1494 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTG 1435 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||||| |||| |||| | ||| || ||||| Sbjct 1434 TCCTGGATCTTAGCC---TTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTA 1378 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || | ||||| || || || ||||| Sbjct 1377 ATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| ||||||||| ||||||||||| || ||||||||||| | || | Sbjct 10437 CGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCA 10378 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| || || || |||| | || ||||| | ||| || ||||| || Sbjct 10377 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTG 10318 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||||| |||| |||| | ||| || ||||| Sbjct 10317 TCCTGGATCTTAGCC---TTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTA 10261 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || | ||||| || || || ||||| Sbjct 10260 ATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318232543500012