Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq36919 109 5e-19 >seq36919 Length=4449 Score = 109 bits (120), Expect = 5e-19 Identities = 205/297 (69%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||| || || || | | | |||||| ||||||||||||||||| || || || || Sbjct 2225 AATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTG 2166 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 ||| ||||| ||||| | || |||| | ||| ||||| || | || | | | | | Sbjct 2165 GAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGT-TCGCCACAA 2107 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 ||||| || ||||| ||||| || || |||||||| ||||| | || ||| || | Sbjct 2106 GATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATGAAGT 2047 Query 13599 ttttttCGTTTTC--TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTC 13656 || ||| || | | | || ||| || || ||||| | || || || || Sbjct 2046 GCTTCTCGCCGTCCTTTAGAGATT--CCCAGTCACCAAGGTCTTTCGCCAAGTCAACTTC 1989 Query 13657 CTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATA 13713 |||||||||||||| ||||| || || ||||| || | | ||| ||||| | ||| Sbjct 1988 TTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGATA 1932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430245492016188