Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7124 111 1e-19 seq58369 109 5e-19 seq36647 98.7 9e-16 seq36821 95.1 1e-14 seq8609 95.1 1e-14 seq61938 84.2 2e-11 >seq7124 Length=12460 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||||| || || ||||| || | || || || | ||||| || Sbjct 7322 CGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCG--AGAGTGTACGAC 7265 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||||||| || || ||||||| | | ||||| ||||||||||| ||||| | Sbjct 7264 CGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCT 7205 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| |||||||| || ||| || |||| | || || || | ||||| Sbjct 7204 TATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGA 7145 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || || ||||||||||| ||||| Sbjct 7144 TGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 109 bits (120), Expect = 5e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||||||||| ||| || || || || | || || || | | ||||| || ||| Sbjct 7545 CACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTC--TGAGAGTGTGCGACCGTCC 7488 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| ||| || || ||||||| | | || |||||||||||||| ||||| ||||| Sbjct 7487 TCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCC 7428 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGT 94974 | ||| |||||||| || ||| | ||| || || || || || | || ||||| Sbjct 7427 TGAATCTTTGCCTTTACATTCTCGATCGAGTC-GCTCGGTTCCACCTCCAAAGTTATGGT 7369 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || || ||||||||||||||||||| Sbjct 7368 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCATGC 7334 >seq58369 Length=2743 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| |||| |||||| || ||||| | || ||||| | || | | Sbjct 714 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA 655 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || | ||||| | |||||||||||| || || || ||||||||| Sbjct 654 TCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTG 595 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || ||||| | | || |||| | | ||||| || | || || Sbjct 594 TCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATC 535 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || |||||||| |||||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||| || | ||| ||||||||||| | ||| || || | ||| | | Sbjct 942 CGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCA 883 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || ||||| ||| | ||||| | || || || || || || |||||||| || Sbjct 882 TCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTTA 823 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| | |||| | | ||||| || | || || Sbjct 822 TCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAATC 763 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || |||||||| ||||||| Sbjct 762 GTCTTACCAGTCAGGGTCTTTACAAAGATTTGCATGC 726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||| || | || ||||||||||| | ||| || ||| |||| || || Sbjct 486 CGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCG--GATAGAGTACGAC 429 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || || || || ||| | || || | || || || || || || || || || | Sbjct 428 CATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCT 369 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | |||||| ||||| ||| | | | |||| | | ||||| || | || | Sbjct 368 TATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAA 309 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || |||||||| || |||||||| || ||||||| Sbjct 308 TCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATGC 270 >seq36647 Length=4477 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||||| ||| || ||||| || | || || || || || | ||| ||| Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || | ||||| | | ||||| || |||||||||||||| || || | | Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGA 4228 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || ||| | |||| | || || || | ||||||||| || Sbjct 4227 ATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTTG 4168 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || |||||||| |||||||| Sbjct 4167 CCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq36821 Length=4459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||| ||||| ||||| || ||||| | ||| ||||| | ||| | | Sbjct 1554 CGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCA 1495 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| ||| | ||||||| ||| || || ||||| || || ||||| ||| Sbjct 1494 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTG 1435 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | | ||| | | || || || | || || Sbjct 1434 TCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATA 1375 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||||| |||||||||||||| Sbjct 1374 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||| ||||| ||||| || ||||| | ||| ||||| | ||| | | Sbjct 10437 CGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCA 10378 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| ||| | ||||||| ||| || || ||||| || || ||||| ||| Sbjct 10377 TCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTG 10318 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | | ||| | | || || || | || || Sbjct 10317 TCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATA 10258 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||||| |||||||||||||| Sbjct 10257 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq61938 Length=2545 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| ||||||||||||||||| || || | ||| |||||||| || ||| | || Sbjct 1 GCTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCGATCGAGT 60 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | || || || | ||||||||| || ||||| || || || ||||||||||||| Sbjct 61 CACTCGGCTCAACCTCCAACGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATCTGCA 120 Query 95007 T 95007 | Sbjct 121 T 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447505042929840