Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq21366 219 7e-53 seq59939 136 6e-28 seq28592 136 6e-28 seq103498 114 2e-21 seq43657 86.0 1e-12 >seq21366 Length=6829 Score = 219 bits (242), Expect = 7e-53 Identities = 208/266 (78%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || || |||||||| || ||||||||||| |||||| Sbjct 280 GCCAAGCGTCATCGCAAGGTTTTGCGTGACAACATCCAGGGCATCACCAAGCCCGCTATC 221 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || |||||||| || |||||| ||||||| | |||| || |||| Sbjct 220 CGTCGTCTTGCACGCCGTGGTGGTGTGAAGCGTATCTCTGGCCTCATCTACGAGGAGACC 161 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||| ||| | ||| ||||||| ||| |||| ||| ||||||| || ||| |||||| Sbjct 160 TGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTTTTCCGTGATGCTGTCACCTACACCGAG 101 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || || || ||||| |||||| ||||||| |||||||||| || |||||||||||| Sbjct 100 TATGCCAAGCGAAAGACCGTCACCACCATGGACGTCGTCTATGCTTTAAAACGTCAAGGC 41 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| |||| |||||||| |||| Sbjct 40 CGTACCCTTTACGGTTTTGGTGGTTA 15 >seq59939 Length=2654 Score = 136 bits (150), Expect = 6e-28 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 16544 GAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCAC 16603 || |||| |||| ||| | ||| ||||||| ||| |||||||| ||| ||| || | Sbjct 3 GAGGAGACCCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTTATCCGTGACGCTGTCACC 62 Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 || |||||||| || || || ||||| |||||| ||||||| |||||||||| |||||| Sbjct 63 TACACCGAGCATGCCAAGCGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAA 122 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||||||||||| |||| |||||||| |||| Sbjct 123 CGTCAAGGCCGTACCCTTTACGGTTTTGGTGGTTA 157 >seq28592 Length=5508 Score = 136 bits (150), Expect = 6e-28 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | | || |||||||||||||||||||| || ||||| ||| Sbjct 880 GCCAAGCGGCATCGGAAGGTTTTGCGTGATAACATCCAAGGAATCACTAAACCAGCAATC 939 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| |||||||| || || || |||||| | || || | | || ||||| | Sbjct 940 AGGCGTCTTGCTCGTCGAGGAGGCGTTAAGCGTATATCAGGTCTTATATACGAAGAAACG 999 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||| | ||||| ||| ||||||| |||||| | ||||| || Sbjct 1000 CGCGGAGTTCTGAAAGTATTCCTGGAGAATGTTATCCGTGATGCCGTAACGTATACTGAA 1059 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||| | |||||||| || | |||||| | || || || |||| || ||||| Sbjct 1060 CATGCTAAGAGAAAGACTGTTACGGCTATGGATGTGGTTTACGCTCTGAAGCGCCAAGGG 1119 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 1120 CGTACCCTTTACGGTTTCGG 1139 >seq103498 Length=1071 Score = 114 bits (126), Expect = 2e-21 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || || |||||||| || || || ||||| || ||| Sbjct 911 GCCAAGCGTCATCGCAAGGTTTTGCGTGACAACATCCAGGGCATTACTAAGCCCGCCATC 970 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || |||||||| || |||||| ||||||| | || | || |||| Sbjct 971 CGTCGTCTTGCACGCCGTGGTGGTGTGAAGCGTATCTCTGGCCTCATCCACGAGGAGACC 1030 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA 16593 |||| ||| | ||| ||||||| ||| |||||||| ||| Sbjct 1031 CGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTTATCCGTGA 1071 >seq43657 Length=3796 Score = 86.0 bits (94), Expect = 1e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||| ||| || ||| | |||| | || || | ||||| ||||| | ||||| ||||| Sbjct 2590 TGACGCTGTCACCTACAGCGAGTATGCCAAGTGAAAGACCTTCACCGCAATGGACATCGT 2649 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||||| ||||||||| ||||||||| |||| |||||||| |||||| Sbjct 2650 CTATGCTTTGAAACGTTAAGGCCGTACCCTTTACGGTTTTGGTGGTTAAT 2699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78946928213742