Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq36919 134 2e-26 seq38847 104 3e-17 >seq36919 Length=4449 Score = 134 bits (148), Expect = 2e-26 Identities = 218/310 (70%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || |||| ||| || ||||| | ||| |||||| || |||||||| ||||| || || Sbjct 2230 TCCTTAATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCA 2171 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || || |||||||| | || || | |||||||||||| || || |||| Sbjct 2170 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAA--GTTCG 2113 Query 33685 GC-CAA-ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33742 | ||| ||||||||| ||||||||||| || || |||||||| || | || | | | Sbjct 2112 CCACAAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAA 2053 Query 33743 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTA 33802 | || | || ||| | |||| | ||| ||| | ||||| | | || | Sbjct 2052 TGAAGTGCTTCTCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAA 1993 Query 33803 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAAT 33862 ||||||| || ||||||||||| ||| | || || || || | | |||||| |||| || Sbjct 1992 CTTCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGAT 1933 Query 33863 ATTGGATTGG 33872 | ||||| || Sbjct 1932 ACTGGATAGG 1923 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 ||||||||||| |||||||| || || || ||||| || ||||||| ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 33076 ATGAAATCAAACGGATTGGTAACATTATAAAT 33107 |||||||| || || || || || |||||| Sbjct 2891 ATGAAATCGAATGGGTTCGTGTCACGATAAAT 2860 >seq38847 Length=4243 Score = 104 bits (114), Expect = 3e-17 Identities = 122/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| ||| | ||||| | ||| |||||| || |||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||| || || |||||||| | || | | ||||||| ||| || || || ||| Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | ||||||||| ||||||||||| || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621854753069040