Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq58369 134 1e-26 seq13381 100 3e-16 seq73473 98.7 9e-16 seq36821 87.8 2e-12 seq8609 87.8 2e-12 >seq58369 Length=2743 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| ||| | ||||| | || | || | | Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | |||||| ||||| |||||||| |||||||| || || ||| Sbjct 104 GACTCGATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGACCAA 163 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||| |||| || |||||||||||||||||||| | | | || ||||||||| Sbjct 164 CAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAAC 223 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || ||| | ||||||||||| || || |||| || Sbjct 224 ATTCAAAAGGAGTCCACTCTGCATCTGGTCCTCAGGCTCCGAGGTGG 270 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | ||||| || |||| ||| | || | ||| | | Sbjct 272 ATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGT 331 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || || ||| || || || ||||| || || || ||| Sbjct 332 GACTCAATTGAGAACGTGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCAA 391 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||| |||| || |||||| ||||||||||||| | | | | |||||| ||| Sbjct 392 CAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAAC 451 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||||||| ||||| || | ||||||||| || Sbjct 452 ATTCAAAAGGAATCAACCCTACATCTGGTCTTG 484 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || |||| ||| | || | ||| | | Sbjct 500 ATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGT 559 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | |||||| || || ||||||||||| || || || ||||| Sbjct 560 GACTCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCAG 619 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || || ||||||||||| |||| | | || || || || Sbjct 620 CAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCTGATTACAAT 679 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||||||||| |||||| | |||||||| ||| Sbjct 680 ATTCAAAAAGAGTCTACTCTGCATCTGGTGCTG 712 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | ||||| || |||| || | || | ||| | | Sbjct 728 ATGCAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGT 787 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | ||||| | ||||| ||||| || || ||||| || || || || ||| Sbjct 788 GACTCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAA 847 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||| || | || ||| |||||||||||||||| | | | | ||||| ||| Sbjct 848 CAGCGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAAC 907 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| ||||| ||| ||||||||||| || | || | || |||| Sbjct 908 ATCCAAAAGGAATCGACTCTCCATCTGGTCTTGCGTCTCCGTGGTGGAA 956 >seq13381 Length=9068 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 71669 CAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATT 71728 ||||| ||| || ||||||||||| || ||||| ||||| | || || || ||||| Sbjct 4256 CAAACAAGTGACGACCTATGGAATGCGGCGCAGCGCCAGCTCCTCACAGAAGGCAAAATC 4315 Query 71729 CACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGG 71773 ||||| | ||| ||||||||||||||||||||||| ||||| ||| Sbjct 4316 CACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATACTCGAATGG 4360 >seq73473 Length=1996 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26770 TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACG 26829 |||| | ||||| || || || ||||| ||| | || || | || | ||| | | || Sbjct 1405 TGCAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGCG 1464 Query 26830 ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAAC 26889 || | |||||| | ||||| |||||| |||||||| || || || || || || | Sbjct 1465 ACTCGATCGAGAATGTCAAGGCTAAGATTTAGGACAAAGAGGGAATCCCACCAGACCAGC 1524 Query 26890 AAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACA 26949 || || |||||| || ||| |||||||||||||| | | | | || || || |||| Sbjct 1525 AACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACAACA 1584 Query 26950 TTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 | || || || ||||| | ||| |||||||| Sbjct 1585 TCCAGAAGGAGTCTACACTGCATTTGGTCCTG 1616 >seq36821 Length=4459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || ||||| || | || || | || | || | | | Sbjct 1340 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 1399 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 1400 GACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAA 1459 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | || ||| ||||||||||| |||| | | || || || ||| Sbjct 1460 CAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 1519 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || |||||||| ||||| | ||||||||| || Sbjct 1520 ATCCAAAAAGAGTCTACATTGCATCTGGTCTTG 1552 >seq8609 Length=11408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| || ||||| || | || || | || | || | | | Sbjct 10223 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 10282 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 10283 GACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAA 10342 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | || ||| ||||||||||| |||| | | || || || ||| Sbjct 10343 CAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 10402 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || |||||||| ||||| | ||||||||| || Sbjct 10403 ATCCAAAAAGAGTCTACATTGCATCTGGTCTTG 10435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477822981715680