Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq31935 178 3e-39 seq6225 84.2 6e-11 >seq31935 Length=5035 Score = 178 bits (196), Expect = 3e-39 Identities = 394/583 (68%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || ||||| | || ||| | | || || || || | || ||||||||||| | Sbjct 1368 TTTACTCACGCATCTCCCACACTTTTTAACGCCGGGACCCCTATGCCACAGATGTCCAGT 1427 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || | ||||| | |||||||||||| ||| ||||| || | ||| ||| | ||| | Sbjct 1428 TGTTACCTTCTCACAATGAAGGACGACAGCATTGAGGGCATTTATGATACATTGAAGCAG 1487 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGT-G 363724 ||||| ||||| || || ||||| || ||||| ||| | | || || || | | || | Sbjct 1488 TGTGCGCTTATATCGAAAAATGCTGGTGGAATCGGTCTCAACGTTC-ACTGTATCCGAAG 1546 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || || | || || || || ||| | || ||||| |||| || ||||| | Sbjct 1547 CA-AGGGTACTTTTATAGCGGGAACGAATGGAGAGTCCAATGGCTTGGTCCCAATGCTCC 1605 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| || ||| ||||||||||||| |||||| ||||| ||| || | Sbjct 1606 GCGTCTTCAACAACACAGCGCGGTACGTCGACCAAGGTGGAAACAAGCGACCAGGTGCCT 1665 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || | ||||| || | || ||| | |||| | ||||| || |||| Sbjct 1666 TCGCGATTTACTTGGAGCCATGGCACCCAGACATTCTGCAGTTCGTAGAGCTACGCAAAA 1725 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||| || || || | || |||||||| ||| || ||||||||| ||||| Sbjct 1726 ACACTGGCGCCGAAGAGACTAGAGCTCGTGATCTTTTCATGGCTCTTTGGGTTCCTGACT 1785 Query 363965 ATTTTATGAAGCGCGTG-GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 |||||| |||||| ||| || | || ||| |||| | || ||||| ||| Sbjct 1786 TATTTATGCGACGCGTGCGAGACA-ACGACAAGTGGACACTTATGGATCCTCACGAGTGT 1844 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 |||||||||| |||| |||||||| || | || | ||| ||| || |||||| Sbjct 1845 CCAGGTCTTTTCGATTGTTGGGGTGAAGAATTTGAAAAGTTGTACACAAAATACGAATCG 1904 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGT 364126 || ||||| | || || || |||| |||||| | |||||| Sbjct 1905 GAAGGAAAAGGCCGCAAAACTCTTCCGGCACAGGAAGTATGGT 1947 >seq6225 Length=13228 Score = 84.2 bits (92), Expect = 6e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 65872 TTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGC 65931 || |||| || || || || ||| |||| | ||| | || || | ||||| |||| Sbjct 4706 TTTCGAACGGTGCCATCGTATTTGACCATAACAGATTCCATAGCTTTAATAAGACGACGC 4647 Query 65932 TGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGAC 65991 |||||||||||| | | || || || || || ||||| | |||||||||||| || | Sbjct 4646 TGGATGTAACCAGTTTCGGCTGTCTTCACAGCAGTATCGATGAGACCTTCACGACCACCC 4587 Query 65992 ATTGCAGAAAAGAAAAACTCAGTCGGTTGTAGACCA 66027 || || ||||||||| ||||| ||| |||||| Sbjct 4586 ATGGCGTGAAAGAAAAATTCAGTGGGTGTCAGACCA 4551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301010799909908