Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq58369 116 3e-21 seq36821 107 2e-18 seq8609 107 2e-18 seq73473 96.9 3e-15 >seq58369 Length=2743 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| ||| | || || | || |||||| | | Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | |||||| | |||||| ||||| |||||||| || ||||| || || ||| Sbjct 104 GACTCGATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGACCAA 163 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||||| || |||||| ||||||||||||| | | | || || |||||| Sbjct 164 CAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTATAAC 223 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 224 ATTCAAAAGGAGTCCAC 240 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | ||||| || |||||||| | || ||||| ||| Sbjct 272 ATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGT 331 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || || || ||| || || || || || || || || ||| Sbjct 332 GACTCAATTGAGAACGTGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCAA 391 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||||| || |||||||||||||||||||| | | | ||| || ||| Sbjct 392 CAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAAC 451 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| ||||| || Sbjct 452 ATTCAAAAGGAATCAAC 468 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || |||||||| | || ||||| ||| Sbjct 500 ATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGT 559 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | |||||| || || |||||||||||||| || || ||||| Sbjct 560 GACTCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCAG 619 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || || || |||||||| |||| | | | || ||||| || Sbjct 620 CAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCTGATTACAAT 679 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| ||||| | ||| | ||| Sbjct 680 ATTCAAAAAGAGTCTACTCTGCATCTGGTG 709 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | ||||| || ||||||| | || ||||| ||| Sbjct 728 ATGCAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGT 787 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | ||||| ||||| || || ||||| || || || || ||| Sbjct 788 GACTCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAA 847 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| ||||||| | || ||| || ||||||||||||| | | | | | || || ||| Sbjct 848 CAGCGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAAC 907 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 908 ATCCAAAAGGAATCGAC 924 >seq36821 Length=4459 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| || | ||||| | || || ||| ||| | Sbjct 1340 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 1399 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 1400 GACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAA 1459 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||| || |||||||| |||| | | | || ||||| ||| Sbjct 1460 CAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 1519 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || |||||||| |||||| | ||| | || || Sbjct 1520 ATCCAAAAAGAGTCTACATTGCATCTGGTCTT 1551 >seq8609 Length=11408 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| || | ||||| | || || ||| ||| | Sbjct 10223 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 10282 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || ||| | || || ||||| ||||| ||||| || || || || ||| Sbjct 10283 GACTCGATTGAGAATGTTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAA 10342 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||| || |||||||| |||| | | | || ||||| ||| Sbjct 10343 CAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAAC 10402 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || |||||||| |||||| | ||| | || || Sbjct 10403 ATCCAAAAAGAGTCTACATTGCATCTGGTCTT 10434 >seq73473 Length=1996 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23992 TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACG 24051 |||| | ||||| || || || ||||| ||| | ||||| | || || || | | || Sbjct 1405 TGCAGATTTTTGTGAAGACGTTGACTGGCAAAACTATTACTCTAGAGGTTGAACCTAGCG 1464 Query 24052 ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAAC 24111 || | |||||| | ||||| |||||| |||||||| || || || || || || | Sbjct 1465 ACTCGATCGAGAATGTCAAGGCTAAGATTTAGGACAAAGAGGGAATCCCACCAGACCAGC 1524 Query 24112 AGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACA 24171 | || | |||| || ||| || ||||||||||| | | | | | || ||||| |||| Sbjct 1525 AACGATTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGCACCCTCTCTGATTACAACA 1584 Query 24172 TTCAAAAAGAATCTACAATTCATTTAGT 24199 | || || || |||||| | ||||| || Sbjct 1585 TCCAGAAGGAGTCTACACTGCATTTGGT 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429200881185570