Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq58369 109 5e-19 seq73473 102 8e-17 seq7124 95.1 1e-14 seq79732 93.3 4e-14 seq36821 91.5 1e-13 seq36647 91.5 1e-13 seq8609 91.5 1e-13 seq31935 82.4 7e-11 >seq58369 Length=2743 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||||| | ||| | || ||||| |||||||| |||||||| Sbjct 727 GCCACCGCGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGA 668 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| || || || || ||| |||| | | ||||| ||||| || Sbjct 667 GAGCGTACGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGG 608 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||||||||| |||||| |||| | ||| | || || ||| |||| Sbjct 607 GATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGAC 548 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || ||||| || || || || || ||||||||||| Sbjct 547 CTCCAGGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||||| ||| || ||||||||||||||||| ||| Sbjct 498 CCACCACGGAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 439 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| ||| | || | ||||| |||||||| ||| Sbjct 438 AGAGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGG 379 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||||| ||| | | ||| | | || ||| |||| Sbjct 378 ATCCCCTCCTTATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACC 319 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || || || || || || || || ||||| |||||| Sbjct 318 TCCAGGGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 >seq73473 Length=1996 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | |||||| || ||||| | || |||||||| || ||||||||||| Sbjct 1631 GCCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGA 1572 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || || || || || ||| | || || || |||||||| || || Sbjct 1571 GAGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGG 1512 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| |||||||| || || ||||| | ||| | | ||| | | || | Sbjct 1511 GATTCCCTCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAAC 1452 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 || | |||| ||||| || || | || || || |||||||||| ||| Sbjct 1451 CTCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCACGAC 1401 >seq7124 Length=12460 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | |||||| || || || | |||||||||||| || || ||||| || Sbjct 7335 GCCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGA 7276 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 7275 GAGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGG 7216 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| || || Sbjct 7215 AATGCCTTCCTTATC 7201 >seq79732 Length=1757 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| ||||||||||| || || ||||| || ||||| ||||| ||||| ||||| Sbjct 1170 GGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCCTCAAGCTGTTTGCC 1229 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||||| || |||||||| |||||||| || |||||||| || || ||| Sbjct 1230 GGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGAATCTTGGCCTT 1289 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | | || | | ||| | |||| ||| | || || || ||||| || Sbjct 1290 TACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTCCCTGTTAGGGT 1349 Query 131217 TTTTACGAAAATCTGCATG 131235 ||| || || ||||||||| Sbjct 1350 TTTGACAAATATCTGCATG 1368 >seq36821 Length=4459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || ||||| ||||| ||||||||||| Sbjct 1566 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 1507 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || || || || ||| |||||| | ||| ||||| || ||| Sbjct 1506 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 1447 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | ||| | | ||| ||| ||| | Sbjct 1446 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 1387 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 || | |||| || || || || | ||||| || || |||||||| || Sbjct 1386 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCATCAC 1337 >seq36647 Length=4477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| || || || || | ||||||||||| || || ||||| || Sbjct 4366 GCCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGA 4307 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | ||||||||| ||| |||| | |||||||||||||||||| Sbjct 4306 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 4247 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| || || Sbjct 4246 AATACCTTCCTTATC 4232 >seq8609 Length=11408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || ||||| ||||| ||||||||||| Sbjct 10449 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 10390 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || || || || ||| |||||| | ||| ||||| || ||| Sbjct 10389 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 10330 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | ||| | | ||| ||| ||| | Sbjct 10329 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 10270 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 || | |||| || || || || | ||||| || || |||||||| || Sbjct 10269 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCATCAC 10220 >seq31935 Length=5035 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 145627 GATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGG 145685 ||| ||||| | ||||||||| || || || || |||| ||| |||| |||||||| | Sbjct 2201 GATGGACGCGAGATTACAAACGGCAGTTTCATCAGGCGA-GCTATATTCAACGATCTCCG 2143 Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACG 145745 ||||| || || || || |||||||| | ||| |||||| || | || |||| Sbjct 2142 TGCACAGGTTCGAGCACTTAATTGTTCCCAGGTGTTGGTGATTAGACTTGCGATTACACG 2083 Query 145746 CGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 |||||||||| | |||| | || ||| ||||| Sbjct 2082 CGTCCTTGTATAACATGAATGGATTGCCGGTCTC 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471185042952960