Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq73473 120 2e-22 seq58369 118 7e-22 seq36821 105 4e-18 seq8609 105 4e-18 seq79732 104 2e-17 seq48629 93.3 3e-14 >seq73473 Length=1996 Score = 120 bits (132), Expect = 2e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||||| |||||||| || || |||||| || || ||||||||||| Sbjct 1630 CCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAG 1571 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | |||||| ||||| || || | ||||| || || | ||| Sbjct 1570 AGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGG 1511 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || ||| ||||||| || | || | | |||||| Sbjct 1510 ATTCCCTCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACC 1451 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA 38316 |||| ||||||||||| || ||||| || ||||| || ||||||| Sbjct 1450 TCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq58369 Length=2743 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| ||||| ||| ||||| ||| |||||||||||||||||||| | ||| | Sbjct 714 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA 655 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||| || || || || || | ||| ||||| | ||||| |||||||||| Sbjct 654 TCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTG 595 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||||| || ||||||| | || || | ||| || || | ||||| Sbjct 594 TCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATC 535 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| |||| ||| ||||| || |||||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| ||||| ||| ||||| ||| ||||| |||||||| || || | || | Sbjct 1171 ACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCC 1112 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || |||| |||||| ||||| ||||| || |||||||| || | ||||| || ||||| Sbjct 1111 ATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTT 1052 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || || || ||||||||| | | | || | ||| || || | ||||| Sbjct 1051 ATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAAT 992 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || ||||| || || |||||||||||||| Sbjct 991 GGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||| |||||| |||||||||||| || || ||||| | || | || || Sbjct 252 ACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCG 193 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||| ||||| || || || || ||||| || | || | || |||||||| Sbjct 192 AGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGG 133 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||||| || | || | | || || || || || |||||||| Sbjct 132 ATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTG 73 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || ||||| |||||||| Sbjct 72 CCAGTCAAAGTCTTAACGAAGATCTGCAT 44 >seq36821 Length=4459 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||| |||| ||| | || ||| ||||| || ||||||||||| Sbjct 1567 ACCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGA 1508 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | |||||| ||||| || ||||| | ||||| || | ||| Sbjct 1507 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGG 1448 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| |||||| || || ||| ||||||| | | || | ||||| Sbjct 1447 GATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAAC 1388 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 1387 CTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | |||||| |||| ||| | || ||| ||||| || ||||||||||| Sbjct 10450 ACCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGA 10391 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | |||||| ||||| || ||||| | ||||| || | ||| Sbjct 10390 GAGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGG 10331 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| |||||| || || ||| ||||||| | | || | ||||| Sbjct 10330 GATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAAC 10271 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 10270 CTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq79732 Length=1757 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||| ||| ||||||||| ||||| ||||| |||| | ||| | || || Sbjct 1159 ACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCCTCA 1218 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| ||||| || ||||| ||||| || || | |||| || ||||||||| | Sbjct 1219 AGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGA 1278 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | || | || | ||||| || | || ||||| || Sbjct 1279 ATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTC 1338 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | |||||| || |||||||||||| Sbjct 1339 CCTGTTAGGGTTTTGACAAATATCTGCATG 1368 >seq48629 Length=3391 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || Sbjct 2840 CTCTCTCTTCAAAGTTCTTTTAAACTTTCCCACACGGTACTTGTTCGCTATCGGATTCAG 2781 Query 20007 GGTAATATTTAGCCTT 20022 | | |||| |||||| Sbjct 2780 GTTTGTATTCAGCCTT 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334374496182314