Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq31935 143 3e-29 seq36919 116 5e-21 seq38847 86.0 8e-12 >seq31935 Length=5035 Score = 143 bits (158), Expect = 3e-29 Identities = 358/541 (66%), Gaps = 2/541 (0%) Strand=Plus/Minus Query 62971 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACA 63030 ||||||| ||| ||||| ||| || || || |||||| || | || || ||||| Sbjct 1901 TTCGTATTTTGTGTACAACTTTTCAAATTCTTCACCCCAACAATCGAAAAGACCTGGACA 1842 Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63090 || | ||| ||| | | ||||| ||| || ||| ||| |||||| | || Sbjct 1841 CTCGTGAGGATCCATAAGTGTCCACTTGTCGTTGTCTCGCACGCGTCGCATAAATAAGTC 1782 Query 63091 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63150 ||||| ||||||||| || || ||||| | | |||| || ||| || || || || Sbjct 1781 AGGAACCCAAAGAGCCATGAAAAGATCACGAGCTCTAGTCTCTTCGGCGCCAGTGTTTTT 1722 Query 63151 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63210 || || | |||| || ||| || | ||||| || |||||||| || || | | Sbjct 1721 GCGTAGCTCTACGAACTGCAGAATGTCTGGGTGCCATGGCTCCAAGTAAATCGCGAAGGC 1662 Query 63211 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63270 || || || |||||||| || || || | ||| | || ||||| || | || | | Sbjct 1661 ACCTGGTCGCTTGTTTCCACCTTGGTCGACGTACCGCGCTGTGTTGTTGAAGACGCGGAG 1602 Query 63271 CATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACG 63330 |||||| | | |||||||| ||||| || || | ||| | | || || || Sbjct 1601 CATTGGGACCAAGCCATTGGACTCTCCATTCGTTCCCGCTATAAAAGTACCCTTGCTTCG 1542 Query 63331 AATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63389 ||| | | | | | ||||| ||||| || || |||| || || | || || | | Sbjct 1541 GATAC-AGTGAACGTTGAGACCGATTCCACCAGCATTTTTCGATATAAGCGCACACTGCT 1483 Query 63390 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 63449 | || |||||||| |||||||| || || || ||| |||| | || || |||| || | Sbjct 1482 TCAATGTATCATAAATGCCCTCAATGCTGTCGTCCTTCATTGTGAGAAGGTAACAACTGG 1423 Query 63450 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATT 63509 |||| || | | || || || ||||| | || ||||| |||||||||||||| | Sbjct 1422 ACATCTGTGGCATAGGGGTCCCGGCGTTAAAAAGTGTGGGAGATGCGTGAGTAAACCACT 1363 Query 63510 T 63510 | Sbjct 1362 T 1362 >seq36919 Length=4449 Score = 116 bits (128), Expect = 5e-21 Identities = 213/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || |||| ||| || || || | ||| |||||| || |||||||| ||||| || || Sbjct 2230 TCCTTAATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCA 2171 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTAC--AAAATCGTT 33039 || || || || ||||| || | || || | |||||||||||| || || ||| Sbjct 2170 ATCTGGAAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCG-- 2113 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | | ||||||||| ||||||||||| || || |||||||| || | || | | | Sbjct 2112 CCACAAGATTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAA 2053 Query 33100 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 33159 | || | || ||| | |||| | ||| ||| | ||||| | | || | Sbjct 2052 TGAAGTGCTTCTCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAA 1993 Query 33160 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 33219 ||||||| || ||||||||||| ||| | || || || || | | |||||| ||||||| Sbjct 1992 CTTCTTCAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGAT 1933 Query 33220 ATTGAATTGG 33229 | || || || Sbjct 1932 ACTGGATAGG 1923 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 ||||||||||| |||||||| || || || ||||| || ||||| | ||||| |||||| Sbjct 2951 TGGTATTCACCAACACGTTTCTCAAAGAAGTTAGTCTTCCCTTCCAGAGATATGTTTTCC 2892 Query 32433 ATGAAATCGAATGGATTGGTAACATTATAAAT 32464 |||||||||||||| || || || |||||| Sbjct 2891 ATGAAATCGAATGGGTTCGTGTCACGATAAAT 2860 >seq38847 Length=4243 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||||| ||| | || || | ||| |||||| || |||||| | ||||| || || Sbjct 1938 TCTTTAATATACATGTCGATAAGAAGGGAATACATCTCTGAATGA-TATTTTCGATTGCA 1996 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || || || || ||||| || | || | | ||||||| ||| || || || || Sbjct 1997 ATCTGGAAGCCATAGAAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCC 2056 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | | ||||||||| ||||||||||| || ||||||||||| || Sbjct 2057 ACAAGATTTTCATTTACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632520815402400