Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq36919 150 2e-31 seq38847 107 2e-18 >seq36919 Length=4449 Score = 150 bits (166), Expect = 2e-31 Identities = 233/331 (70%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || ||||| | || |||||||| || ||||| | ||| || |||||||| ||| Sbjct 2224 ATATACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTGG 2165 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | ||||| | |||||| ||||||||| || || | || ||| Sbjct 2164 AAGCCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCGCCACAAGA 2105 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA--ATATATGCTTTATAAAAT 93539 |||||||| ||||| || ||| ||| |||||||| || | | |||| || || | Sbjct 2104 TTTTCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATG--AAATGAAGT 2047 Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTT 93599 | ||||| | || || || ||||| || || ||||| | | || ||||||| Sbjct 2046 GCTTCTCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTT 1987 Query 93600 CGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAA 93659 | || |||||||| || || | ||||| ||||| | | ||| || || ||||| || | Sbjct 1986 CAACGGTCCAAAATGAAGCCACCGCTTTCTTGTAAAACTGCCAGATATCATGATACTGGA 1927 Query 93660 TTGGAAATATGACAAAACGATTAGGGTTATC 93690 | || | || || || || | ||||| || Sbjct 1926 TAGGCATGATCACGAACCGTCTCGGGTTCTC 1896 >seq38847 Length=4243 Score = 107 bits (118), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 93371 TCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAG 93430 ||||| | || |||||||| || ||||| | ||| || |||||||| ||||| || ||| Sbjct 1953 TCGATAAGAAGGGAATACATCTCTGAATG-ATATTTTCGATTGCAATCTGGAAGCCATAG 2011 Query 93431 AAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTG 93490 ||||| | |||| | |||||| | ||| ||| || | ||| || ||||||||||| Sbjct 2012 AAACAACGGGCTTTTGGGATCTGTAATTCCTGACTGAAGCGCTCCACAAGATTTTCATTT 2071 Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||| || ||| |||||||||||| || Sbjct 2072 ACTATTCCGTCGCTTGCTGCAAAAAAGGC 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555884247136560