Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq43682 104 5e-17 seq104533 98.7 2e-15 seq103538 98.7 2e-15 seq21895 98.7 2e-15 seq116723 95.1 2e-14 seq90354 93.3 9e-14 seq137790 91.5 3e-13 seq36161 89.7 1e-12 seq23839 89.7 1e-12 seq3235 89.7 1e-12 seq71160 86.0 1e-11 seq23319 86.0 1e-11 >seq43682 Length=3794 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 2982 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2923 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 2922 CCCACGTCGGGC 2911 >seq104533 Length=1048 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 684 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 743 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 744 CCCACGTTGGGC 755 >seq103538 Length=1070 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 676 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 735 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 736 CCCACGTTGGGC 747 >seq21895 Length=6719 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 2561 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2620 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2621 CCCACTTTGGGC 2632 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 2942 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3001 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3002 CCCACGTTGGGC 3013 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||| ||| ||||||| Sbjct 5250 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCCTGGTTTCGAGC 5309 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 5310 CCCACGTTGGGC 5321 >seq116723 Length=813 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | |||||||||| || | ||||||||||||||| Sbjct 739 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAAACTCGGGGTCGTGGGTTCGAG 680 Query 142563 CCCCACATCGGG 142574 |||| | ||||| Sbjct 679 CCCCGCGTCGGG 668 >seq90354 Length=1404 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| | ||||||||||||| | ||||| |||||||| Sbjct 450 TAGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGAGGGTTCGA 391 Query 142562 GCCCCACATCGGGC 142575 || |||| | |||| Sbjct 390 GCTCCACGTTGGGC 377 >seq137790 Length=532 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||| | ||||||||||||| | |||||||||| ||||| Sbjct 132 GCCCGGCCAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTCCGAGC 73 Query 142564 CCCACATCGGGCA 142576 ||||| | ||||| Sbjct 72 CCCACGTTGGGCA 60 >seq36161 Length=4528 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||| ||||||||| | ||||||||| |||||| Sbjct 2503 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGAGTCTTAATCTCGGGGTCGTGGGCTCGAGC 2444 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2443 CCCACGTTGGGC 2432 >seq23839 Length=6324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||| |||||||||||||| | ||||||||||||| | ||||||||||| |||| Sbjct 2461 GCCCGGCTAGATCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTTGAGC 2520 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2521 CCCACGTTGGGC 2532 >seq3235 Length=16963 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 217813 GCTGGCACCAAAAACTCTGGTCTCTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCC 217872 || |||||||||||||| | ||| || || ||||| |||||||| || ||||| Sbjct 9206 GCGGGCACCAAAAACTCCGCCTCCTGTACGCTGATCCTCACAGAGGGCGATTCAGCCAAG 9147 Query 217873 ACGCTGGCAACCGCTGGTCTTGCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTC 217932 || ||||| || || | ||||||||| ||||| | ||||| | || ||||| Sbjct 9146 ACTCTGGCTGTTGCCGGGTTGAGCGTGGTGGGGCGTGACCGTTATGGCGTGTTTCCCCTG 9087 Query 217933 CGTGGTAAGCTGCTCAACGTGCGCGATGCCTC 217964 || ||||| |||||||| ||||| || ||||| Sbjct 9086 CGCGGTAAACTGCTCAATGTGCGAGAGGCCTC 9055 >seq71160 Length=2098 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||| ||| | |||| ||||||||||| Sbjct 679 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTATTCTCGGGGTCATGGGTTCGAGC 738 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 739 CCCACGTTGGGC 750 >seq23319 Length=6427 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| | ||| ||||||||| | |||||||||||| | Sbjct 1315 TAGCCCGGCTAGCTCAGTCGGTAGAGCACAAGATTCTTAATCTCGGGGTCGTGGGTTCAA 1374 Query 142562 GCCCCACATCGGGC 142575 | ||||| | |||| Sbjct 1375 G-CCCACGTTGGGC 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025989246007254