Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq58369 165 1e-35 seq7124 161 2e-34 seq36647 152 9e-32 seq79732 140 6e-28 seq36821 138 2e-27 seq8609 138 2e-27 seq19637 102 1e-16 seq61938 93.3 8e-14 seq43682 91.5 3e-13 seq103538 87.8 3e-12 seq21895 87.8 3e-12 seq104533 86.0 1e-11 seq116723 84.2 4e-11 >seq58369 Length=2743 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || ||||| |||| |||| || || || |||||||||||||| || || ||||| Sbjct 1183 TCCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGA 1124 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | |||||||||| || || ||||||||||| |||| ||||||||| || || Sbjct 1123 GAGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGG 1064 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || || || ||||| ||||| ||||| || || |||| ||| | ||| || Sbjct 1063 GATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGAC 1004 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| || |||||||| || || | ||||| ||||||||||||||| Sbjct 1003 CTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| || || || ||||||||||| || || ||||| ||| Sbjct 726 CCACCGCGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAG 667 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || ||||| ||||||||||| || || || || Sbjct 666 AGCGTACGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGG 607 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| || || || ||||| ||| || | ||| | ||| || Sbjct 606 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACC 547 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||| || || || || || |||||||| || || |||||||| Sbjct 546 TCCAGGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || ||||| |||| || || || || || ||||||||||| || || | Sbjct 956 TTCCACCACGGAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAG 897 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| | || || |||||||| || |||| |||||||| || | Sbjct 896 AAAGGGTGCGGCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGG 837 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||| ||||| ||||| |||||||| ||||| | ||| | ||| | Sbjct 836 GGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGA 777 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || || || || || || |||||||| || || || ||||| Sbjct 776 CCTCCAAAGTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 >seq7124 Length=12460 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || |||||||| ||||| || || || ||| Sbjct 7562 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAG 7503 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || |||||||| || || || || || | ||||| || || ||| Sbjct 7502 AGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGA 7443 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| |||||||||||||| || |||||| | ||| ||| | ||| || Sbjct 7442 ATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTCTCGATCGAGTC-GCTCGGTTCCAC 7384 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| || || || || ||||| || || |||||||| Sbjct 7383 CTCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| ||||||||| || || ||||| || ||||| || || || ||| Sbjct 7334 CCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAG 7275 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || || || | |||||| || || || || || | || ||||| || ||| Sbjct 7274 AGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGA 7215 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || |||||||||||||| || ||||| | ||| | ||| || Sbjct 7214 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACC 7155 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || || ||||| || || || ||||| Sbjct 7154 TCCAACGTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 >seq36647 Length=4477 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||| || || ||||| || ||||| || || || || Sbjct 4365 CCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGAC 4306 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| |||||||| || ||||| || || | || ||||| || ||| Sbjct 4305 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 4246 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || |||||||||||||| || ||||| | ||| | || || Sbjct 4245 ATACCTTCCTTATCCTGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACC 4186 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || |||||||| || || |||||||| Sbjct 4185 TCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq79732 Length=1757 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | | |||| ||| || |||||||| |||||||| |||||||| || Sbjct 1141 CCACCACGAAGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGAC 1200 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || |||||||| || || | ||| ||||| || || Sbjct 1201 AGAGTGCGTCCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGG 1260 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||| ||||| || ||||| | ||| | | || || Sbjct 1261 ATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACC 1320 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || ||||| ||||| ||||||||||| Sbjct 1321 TCGAGGGTTATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 >seq36821 Length=4459 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||| || | || ||||||||||||||||| ||||| ||| Sbjct 1566 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 1507 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || |||||||| || ||||| |||||||| || || Sbjct 1506 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 1447 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||||| || ||| || | ||| ||| | || || Sbjct 1446 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTC-GCTGGGCTCAAC 1388 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || | ||| ||||| || |||||||| Sbjct 1387 CTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||| || | || ||||||||||||||||| ||||| ||| Sbjct 10449 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 10390 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || |||||||| || ||||| |||||||| || || Sbjct 10389 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 10330 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||||| || ||| || | ||| ||| | || || Sbjct 10329 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTC-GCTGGGCTCAAC 10271 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || | ||| ||||| || |||||||| Sbjct 10270 CTCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq19637 Length=7217 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || || ||||| | |||||||| || || ||||| ||| | ||||| || Sbjct 851 ACCAAATGCAGGGTCGACTCGTGCTGGATGTTGTAGTCTGAGAGCGTCTTGCCATCCTCC 792 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||| | || || | || || | |||| || || ||||||| ||| |||||||| Sbjct 791 AACTGCCTACCAGCATAAATCAGACGCTGTTCATCCGGCTGAATGCCCTCCATGTCTTGA 732 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| ||| | || || |||| ||| | || || || || | || | Sbjct 731 ATCTTCGCCTTCACGTCTTCTATACTGTC-GCTGGGCTCGACGGGCAGCGTTAGCGTCTC 673 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| ||||| | ||| | |||||| Sbjct 672 TCCTGTGAGTGTCTTTATGAAGAGCTGCAT 643 >seq61938 Length=2545 Score = 93.3 bits (102), Expect = 8e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||| |||||||| || |||||||||||||| || |||||| | ||| Sbjct 3 TGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCGATCGAGTCA 62 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || || ||||| |||||||| || || || || ||||| || || ||||||||| Sbjct 63 CTCGGCTCAACCTCCAACGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATCTGCATT 122 Query 68463 A 68463 | Sbjct 123 A 123 >seq43682 Length=3794 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 2983 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 2924 Query 84515 CCCCACATCGGGC 84527 |||||| |||||| Sbjct 2923 CCCCACGTCGGGC 2911 >seq103538 Length=1070 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 675 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 734 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 735 CCCCACGTTGGGC 747 >seq21895 Length=6719 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 2560 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 2619 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 2620 CCCCACTTTGGGC 2632 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 ||||||| |||||||||||| ||||| | || ||||||| || | ||||||||||||||| Sbjct 2941 CGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 3000 Query 84515 CCCCACATCGGGC 84527 |||||| | |||| Sbjct 3001 CCCCACGTTGGGC 3013 >seq104533 Length=1048 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 684 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 743 Query 84516 CCCACATCGGGC 84527 ||||| | |||| Sbjct 744 CCCACGTTGGGC 755 >seq116723 Length=813 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| | || ||||||| || | |||||||||||||||| Sbjct 738 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAAACTCGGGGTCGTGGGTTCGAGC 679 Query 84516 CCCACATCGGG 84526 ||| | ||||| Sbjct 678 CCCGCGTCGGG 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920006173837680