Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7124 125 8e-24 seq36647 111 2e-19 seq58369 104 3e-17 seq88470 84.2 2e-11 >seq7124 Length=12460 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||||| ||||| |||| || |||||| || |||||||| || | Sbjct 7334 CCACCGCGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAG 7275 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| ||||| || || || ||||||||||| | || Sbjct 7274 AGTGTACGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGA 7215 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| | |||| || | | | | | ||| |||| |||||| Sbjct 7214 ATGCCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCAC 7156 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||| ||||| || || ||||| |||||||||||||| Sbjct 7155 CTCCAACGTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTGCAT 7108 Score = 120 bits (132), Expect = 3e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41977 ATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 42036 ||| ||| || | | ||| | |||||| |||| || ||| || || |||||||| | Sbjct 7567 ATCAACCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGT 7508 Query 42037 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096 | | || || || |||| || | |||||||||||| || || || ||||| || || | Sbjct 7507 CTGAGAGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTG 7448 Query 42097 CTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGAT 42155 || | || ||||||||| ||| | |||| || | || | | || |||||||| | Sbjct 7447 GAGGAATGCCTTCCTTGTCC-TGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGT 7389 Query 42156 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | || ||||| ||||| || |||||||| |||||||| ||||| Sbjct 7388 TCCACCTCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 >seq36647 Length=4477 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| || |||||| || |||||||| |||| ||| || || | || || Sbjct 4347 ACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCC 4288 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| |||||||| || || ||||||||||| | || | | ||||| ||| || Sbjct 4287 AACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCC-TG 4229 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | |||| || | | | | || ||| |||| ||||| || | ||||||||| || Sbjct 4228 AATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTCTT 4169 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || ||||| ||||| || ||||| Sbjct 4168 GCCAGTCAGGGTCTTCACAAAAATCTGCAT 4139 >seq58369 Length=2743 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||| || ||| ||||||||||||||||||| || || || | Sbjct 714 CGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCA 655 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || || ||||||||||| ||||||| ||||| || | || | || || ||| Sbjct 654 TCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTG 595 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || |||||| ||||| || | | | ||| || | ||| || || | || || Sbjct 594 TCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATC 535 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || ||||| ||||| || ||||| Sbjct 534 GTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| ||| |||||||||||| || || |||| || || ||| | || || Sbjct 252 ACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCG 193 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || || || ||||| || |||||||| ||||| | ||| | | ||| ||||| | Sbjct 192 AGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGG 133 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||||| || | | || ||| || | || || || | ||||| |||||| Sbjct 132 ATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTG 73 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||| ||||| Sbjct 72 CCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||| ||| | || ||||||||||| ||||| || | ||||| || | Sbjct 487 ACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACC 428 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || ||||| || ||||| || |||||||| ||||| | ||| | | |||||| Sbjct 427 ATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTT 368 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 | | ||| |||| | || | || | | | ||| || | ||| || || | || | Sbjct 367 AT-CTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAA 309 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| ||||| |||||||| Sbjct 308 TCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| |||| ||| | || |||||||| || ||||| |||| || || || | Sbjct 943 ACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCC 884 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||| ||||| || |||||||| ||||| | || | | ||||| Sbjct 883 ATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTT 824 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || |||| | | | || ||| || | ||| || || | || || Sbjct 823 ATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAAT 764 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || |||||||||||||||||||| Sbjct 763 CGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| ||||| || ||| ||||| |||||||| || | || || || | Sbjct 1171 ACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCC 1112 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || ||||| || ||||| |||||||| ||||| || ||||| | || | | ||| || Sbjct 1111 ATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTT 1052 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || || | | | | | ||| || | ||| || || | || || Sbjct 1051 ATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAAT 992 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||||||| || | |||||| || || || |||||| Sbjct 991 GGTTTTGCCTGTCAACGTCTTAACGAATATCTGCATT 955 >seq88470 Length=1461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||| |||| || | | ||| |||||| ||||| || ||||||||||||| |||| Sbjct 587 AAAAGTTTGCTCCGCGACCGGGAATTGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 528 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| || ||| Sbjct 527 TCACCACTATACTATCGCGGA 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542260181292960