Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq58369 116 4e-21 seq7124 107 2e-18 seq36821 102 8e-17 seq8609 102 8e-17 seq36647 98.7 1e-15 seq73473 96.9 3e-15 >seq58369 Length=2743 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||| | || || || ||||||||||| || || | || ||||||| | Sbjct 258 CTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCA 199 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| || || |||||||| |||| || ||||| ||||| || || || || ||||| Sbjct 198 TCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTG 139 Query 64349 TCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| | | || ||||| ||| ||| | | |||| | || || || | ||| | Sbjct 138 TCTTGGA-TCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGAT 80 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| |||||||| || ||||| || ||||| Sbjct 79 AGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || ||||| |||||||||||||| || | | || || | ||||| Sbjct 480 ACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCTTCG 421 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||||||||| |||| || ||||| ||||| || || || || || || ||||| Sbjct 420 AGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTATCTTGA 361 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| || ||| | || |||| || || || || | || | |||||| Sbjct 360 ATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCTTG 301 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || || || ||||||||||| Sbjct 300 CCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||||||||| |||||||| | || || || | || Sbjct 711 AGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCC 652 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || || | ||||| | ||||| || || || || |||||||| ||| Sbjct 651 TCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCT 592 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| | | |||| || || || || | || | || Sbjct 591 TGGA-TTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGT 533 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||| || || || ||||| ||||| Sbjct 532 CTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 >seq7124 Length=12460 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || || ||||| || | || || || |||| || ||||||||||| Sbjct 7304 GTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTACGACCGTCCTCCAGCTGCTTGCCA 7245 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| |||||||| ||||| || || || || ||| ||| Sbjct 7244 GCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGAATCTTTGCCTTC 7185 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | | |||| | ||||| || | || | ||||||||| |||| || Sbjct 7184 ACATTTTCGATAGAGTCACTCGGTTCCACCTCCAACGTGATGGTCTTGCCAGTCAGTGTC 7125 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 7124 TTCACAAAGATTTGCAT 7108 >seq36821 Length=4459 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || |||||||| ||||||||||| | || ||||| | || || Sbjct 1548 ACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCG 1489 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || ||||| | || || | ||| ||||| || || |||||||| || || || Sbjct 1488 AGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 1429 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| ||| | | || | || || || |||| ||| | |||||| Sbjct 1428 ATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTTG 1369 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| || || || ||||| Sbjct 1368 CCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || |||||||| ||||||||||| | || ||||| | || || Sbjct 10431 ACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAGAGCGTGCGGCCATCCTCG 10372 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || || ||||| | || || | ||| ||||| || || |||||||| || || || Sbjct 10371 AGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 10312 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| ||| | | || | || || || |||| ||| | |||||| Sbjct 10311 ATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACCTCTAGAGTAATAGTCTTG 10252 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| || || || ||||| Sbjct 10251 CCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq36647 Length=4477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || || ||||| || | | || || | ||||| | ||||||||| Sbjct 4335 GTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCTTCCAACTGCTTGCCA 4276 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| |||||||| ||||| || || || || ||| ||| Sbjct 4275 GCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCCTGAATCTTTGCCTTC 4216 Query 64367 ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | | |||| |||| ||||| || | || | ||||||||| |||| || Sbjct 4215 ACATTTTCGATCGAGTCACTCGGC-TCCACCTCCAACGTGATGGTCTTGCCAGTCAGGGT 4157 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 4156 CTTCACAAAAATCTGCAT 4139 >seq73473 Length=1996 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || |||||| ||||||| || || || ||| Sbjct 1600 GTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCTTCGAGTTGTTTACCG 1541 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||||| || |||||||| || || ||||| ||||| || | || || ||| Sbjct 1540 GCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTAAATCTTAGCCTTG 1481 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | | || | | || || |||| ||| | || ||||| ||||| || Sbjct 1480 ACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATAGTTTTGCCAGTCAACGTC 1421 Query 64427 TTTACGAAAATTTGCA 64442 || || ||||| |||| Sbjct 1420 TTCACAAAAATCTGCA 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498768585405360