Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq58369 109 5e-19 seq36647 105 7e-18 seq36821 98.7 1e-15 seq8609 98.7 1e-15 seq79732 95.1 1e-14 seq31935 84.2 2e-11 >seq58369 Length=2743 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||||| | |||| ||||||||||||||||||||| Sbjct 498 CCACCACGGAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGAT 439 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || |||||||| || |||| | || || |||||||||||||| || Sbjct 438 AGAGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGG 379 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| |||| | || | | || | | ||| | | || || Sbjct 378 ATCCCCTCCTTATC-TTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGAC 320 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||| || ||||| || || || |||||||| |||||| Sbjct 319 CTCCAGGGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCATG 271 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | || |||||||| ||||||||||| Sbjct 954 CCACCACGGAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAA 895 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || |||||||||||||||| |||| || |||||||||||||| || Sbjct 894 AGGGTGCGGCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGG 835 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||| || || | | ||| | | ||| | | || ||| Sbjct 834 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACC 775 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| ||||||||||| || |||||||| || |||||| Sbjct 774 TCCAAAGTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCATG 727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||| ||||| | || ||| || ||||||||||| |||| Sbjct 237 GACTCCTTTTGAATGTTATAGTCAGAGAGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCG 178 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||||||||| || ||||| || |||||||| ||| || ||| | Sbjct 177 AAAATCAGTCGCTGTTGGTCTGGTGGTATCCCCTCTTTGTCTTGGATCTTGGCTTTGACA 118 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | ||| ||||| | || | ||||| ||||||| ||| || Sbjct 117 TTCTCGATCGAGTCACTAGGCTCGACCTCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTA 58 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 57 ACGAAGATCTGCAT 44 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| |||||||| ||||| || | ||||| ||||||||||||||||| | Sbjct 693 GACTCTTTTTGAATATTGTAATCAGAGAGCGTACGGCCATCCTCGAGTTGTTTACCAGCG 634 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || ||||| || || ||||||||||| |||||| ||| | Sbjct 633 AAGATGAGTCTTTGCTGATCCGGGGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACA 574 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||| | | || ||||| | || | ||| ||||||||||| || || Sbjct 573 TTCTCAATAGAGTCACTGGGTTCGACCTCCAGGGTAATCGTCTTACCAGTCAGGGTCTTC 514 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 513 ACAAAAATCTGCAT 500 >seq36647 Length=4477 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | |||||||| || || |||||||| Sbjct 4366 GCCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGA 4307 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || | || || || | |||| |||||||| ||||||||||| Sbjct 4306 CAGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 4247 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| || || ||| | |||| || | | ||| | | ||| ||| ||||| Sbjct 4246 AATACCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCA 4188 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 |||| | ||| | || || |||||||| || || |||||||||||||| || Sbjct 4187 CCTCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATAGC 4136 >seq36821 Length=4459 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | ||||| ||||| |||||||| || Sbjct 1566 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 1507 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||||||||||| ||||||| | ||||||||| || || Sbjct 1506 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 1447 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | | |||| | | ||| ||| Sbjct 1446 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 1387 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||||| ||||| |||||||| Sbjct 1386 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq8609 Length=11408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | ||| | | ||||| ||||| |||||||| || Sbjct 10449 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 10390 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||||||||||| ||||||| | ||||||||| || || Sbjct 10389 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 10330 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | | |||| | | ||| ||| Sbjct 10329 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 10270 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||||| ||||| |||||||| Sbjct 10269 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq79732 Length=1757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || || || || || ||| || ||||| || ||||| |||| Sbjct 1174 GACTCCTTTTGGATATTATAATCCGACAGAGTGCGTCCATCCTCAAGCTGTTTGCCGGCG 1233 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 ||||||| || || ||||| ||||| ||||| |||||||| ||| | || | |||| Sbjct 1234 AAGATTAGCCGTTGCTGGTCTGGAGGGATACCCTCTTTGTC-CTGAATCTTGGCCTTTAC 1292 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | | ||| | | ||| ||||||| || | || || || || || ||||| Sbjct 1293 ATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGGGTTATAGTCTTCCCTGTTAGGGTTTT 1352 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 1353 GACAAATATCTGCATG 1368 >seq31935 Length=5035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGC 153658 || ||||| |||||||| ||||| || || || |||| ||| || | |||||||| | Sbjct 2200 ATGGACGCGAGATTACAAACGGCAGTTTCATCAGGCGA-GCTATATTCAACGATCTCCGT 2142 Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718 ||| ||||| ||| || || |||| | ||| ||||| |||||||| ||||| Sbjct 2141 GCACAGGTTCGAGCACTTAATTGTTCCCAGGTGTTGGTGATTAGACTTGCGATTACACGC 2082 Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 153763 ||| ||| | | |||| | || ||||||||||| ||| | ||| Sbjct 2081 GTCCTTGTATAACATGAATGGATTGCCGGTCTCGATTTGTGCTTC 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495392117035680