Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq73473 105 5e-18 seq58369 95.1 9e-15 seq7124 91.5 1e-13 >seq73473 Length=1996 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || ||||| || || || ||||||||||| ||| | | ||||||| Sbjct 1612 ACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCGTCTTCG 1553 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || || || || ||||| ||| ||||| || ||||| || Sbjct 1552 AGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTAA 1493 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || | |||||| ||| || |||| ||||| ||||| Sbjct 1492 ATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGAGTAATAGTTTTG 1433 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCA 15175 || |||| || || |||||||| |||| Sbjct 1432 CCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq58369 Length=2743 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| ||||| || || ||||| |||||||| ||| ||| | | | ||| Sbjct 483 AAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCT 424 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | ||| ||||| ||| | |||| ||||||||||| ||| || || ||||| || Sbjct 423 TCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCCTCCTTATCT 364 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || || | || || | || || ||| || || | |||||| || Sbjct 363 TGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGGGTAATCGTC 304 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || |||||||||||||| Sbjct 303 TTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || || || || ||||| |||||||| || || | | | ||| Sbjct 939 AAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 880 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || ||| | |||| ||||||||||| || || |||||||| || Sbjct 879 TCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCTTCCTTATCT 820 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || ||| |||| || | || || ||| || || || ||||| || Sbjct 819 TGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAAGTAATCGTC 760 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| || |||||||| |||||||| Sbjct 759 TTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||| | || | || | ||| || || || || ||||| ||||| || || Sbjct 272 TGCCACCTCGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAG 213 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | | ||||| | ||||||||| ||| | |||| ||||||||||| || Sbjct 212 AGAGGGTGCGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTG 153 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| || ||| ||| ||| | || || | || ||| || | Sbjct 152 GTATCCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGA 93 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || || ||||| || |||| ||| || || || || ||||| Sbjct 92 CCTCCAAAGTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTGCAT 44 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| |||||||| || ||||| ||| ||| | | | ||||||| ||| Sbjct 1159 ATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGAGAGCGTGCGGCCATCTTCTAGTTG 1100 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| |||||| || |||||||| || || || || || || || || Sbjct 1099 TTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGGGATACCCTCTTTATCTTGGATCTT 1040 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| |||| || | || || ||| || || | ||||||||||| ||||| Sbjct 1039 AGCCTTCACATTTTCAATGGAGTCACTGGGTTCGACCTCCAGAGTAATGGTTTTGCCTGT 980 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || ||||| Sbjct 979 CAACGTCTTAACGAATATCTGCAT 956 >seq7124 Length=12460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || ||||| || || ||||| || || Sbjct 7562 CCACCACGCAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTC--TG 7505 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || |||| || || || || ||||| | |||| |||||||| || | Sbjct 7504 AGAGTGTGCGACCGTCCTCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAG 7445 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| ||||||||||| ||| ||||| |||||| | || || | ||||| ||| Sbjct 7444 GAATGCCTTCCTTGTCCTGAATCTTTGC-CTTTACATTCTCGATCGAGTCGCTCGGTTCC 7386 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || ||||| || || ||||| || ||||| Sbjct 7385 ACCTCCAAAGTTATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 7336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356780919319790