Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq58369 125 7e-24 seq36821 98.7 9e-16 seq36647 98.7 9e-16 seq8609 98.7 9e-16 seq73473 93.3 4e-14 >seq58369 Length=2743 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| ||| | |||||||||||||||||||||||||| Sbjct 726 CCACCGCGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAG 667 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || || ||||| |||||| |||| | || |||||||| || || Sbjct 666 AGCGTACGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGG 607 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| |||||| |||| | || | | ||| | ||||| Sbjct 606 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACC 547 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || ||||| || || |||||||||||||| Sbjct 546 TCCAGGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCAT 500 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| ||| | |||||||||||||| |||||||| ||| Sbjct 1183 TCCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGA 1124 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| ||||| ||||| || ||| | |||| ||| || || || || || Sbjct 1123 GAGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGG 1064 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || || ||| || ||| | | ||| | || ||| | ||||| Sbjct 1063 GATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGAC 1004 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| |||| || || || || |||||||| Sbjct 1003 CTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 >seq36821 Length=4459 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||| ||| | |||||||||||||| || |||||||| Sbjct 1566 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 1507 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || ||||| || ||| |||| | || ||| || || || || Sbjct 1506 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 1447 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||| | | || | | ||| | ||| || Sbjct 1446 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 1387 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||||| ||||| |||||||| Sbjct 1386 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1340 >seq36647 Length=4477 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || |||||||| || | Sbjct 4365 CCACCACGCAGACGGAGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGAC 4306 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || | ||| || |||||| |||||| |||||||| || ||||| Sbjct 4305 AGCGTACGGCCATCTTCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 4246 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||| | | ||| || | | ||||| | ||| | ||| || Sbjct 4245 ATACCTTCCTTATCC-TGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCAC 4187 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || | || | || ||||| ||||| || || |||||||||||||| || Sbjct 4186 CTCCAACGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATAGC 4136 >seq8609 Length=11408 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||| ||| | |||||||||||||| || |||||||| Sbjct 10449 CCACCACGGAGACGCAAGACCAGATGCAATGTAGACTCTTTTTGGATGTTGTAATCAGAG 10390 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || ||||| || ||| |||| | || ||| || || || || Sbjct 10389 AGCGTGCGGCCATCCTCGAGTTGTTTACCGGCGAAGATTAGTCTCTGTTGGTCTGGGGGG 10330 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||| | | || | | ||| | ||| || Sbjct 10329 ATTCCTTCCTTGTCCTGGATCTTAGCCTTAACATTCTCAATCGAGTCGCTGGGCTCAACC 10270 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||||| ||||| |||||||| Sbjct 10269 TCTAGAGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 10223 >seq73473 Length=1996 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | |||||||| || || || |||||||| Sbjct 1630 CCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAG 1571 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || ||||| || ||| | || ||||| ||||| || || || Sbjct 1570 AGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGG 1511 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| |||||| || || ||||| | |||| | ||| || || || Sbjct 1510 ATTCCCTCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACC 1451 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || | || | |||||||| |||| || || ||||||||||||| Sbjct 1450 TCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474666926134560