Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq58369 114 1e-20 seq73473 89.7 5e-13 seq79732 87.8 2e-12 >seq58369 Length=2743 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||||| || ||| |||||||| || || || ||||| ||||| ||||| Sbjct 729 ATGCCACCGCGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCA 670 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | |||||| || ||| | || | || |||||| ||||| Sbjct 669 GAGAGCGTACGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGG 610 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||||||||| ||||| ||||| ||||| || | | ||| | ||| Sbjct 609 GGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCG 550 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || |||| ||| || || || || || || |||||||| |||||| Sbjct 549 ACCTCCAGGGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTGCATC 499 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | ||| || ||||| || || |||||||||||||| || || || Sbjct 957 ATTCCACCACGGAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCA 898 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| || ||| | |||| ||| || |||||||| Sbjct 897 GAAAGGGTGCGGCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGG 838 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| |||||||| || || |||| ||| | | ||| | ||| Sbjct 837 GGGATACCTTCCTTATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCG 778 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||| || || || || || |||||||| |||||||| Sbjct 777 ACCTCCAAAGTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTGCAT 728 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || ||||| || |||||||||||||| || || || ||| Sbjct 501 ATCCCACCACGGAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCG 442 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | ||| || || ||| | |||| ||| || |||||||| Sbjct 441 GATAGAGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGT 382 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||||||||| || | || | || | | ||| | || Sbjct 381 GGGATCCCCTCCTTATCTTGAATTTTAGCCTTCA-CGTTCTCAATTGAGTCACTGGGTTC 323 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| ||| ||||| || || || || |||||||||||||| Sbjct 322 GACCTCCAGGGTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTGCAT 272 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || || || | || ||| |||||||| || || || ||||||||||| || ||| Sbjct 1183 TCCGCCACGAAGACGCAGCACCAGATGCAGAGTAGACTCTTTTTGGATATTGTAGTCGGA 1124 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || || ||| || | |||||| || ||| |||||| |||||| |||||||| || Sbjct 1123 GAGCGTGCGGCCATCTTCTAGTTGTTTACCGGCGAATATCAGTCGTTGTTGGTCCGGGGG 1064 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || ||||||||||| || || || | ||| | || ||| | ||||| Sbjct 1063 GATACCCTCTTTATCTTGGATCTTAGCCTTCACATTTTCAATGGAGTCACTGGGTTCGAC 1004 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||||| |||||||| || | || || || || || ||||| Sbjct 1003 CTCCAGAGTAATGGTTTTGCCTGTCAACGTCTTAACGAATATCTGCAT 956 >seq73473 Length=1996 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || | |||||| || || ||||| ||||| || ||||| Sbjct 1633 ATGCCACCACGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCA 1574 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | |||||| || ||| | || |||||||||||||| || Sbjct 1573 GAGAGGGTGCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGT 1514 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || | ||| || |||| || | | |||| || || Sbjct 1513 GGGATTCCCTCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCA 1454 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 || || ||||||| |||||||| || | || || |||||||| |||| Sbjct 1453 ACCTCTAGAGTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCA 1405 >seq79732 Length=1757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || || | || || || || || || |||||||||||||||||||| | Sbjct 1141 CCACCACGAAGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCC--G 1198 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || | ||||| || ||| | || | ||||||||||| || | Sbjct 1199 ACAGAGTGCGTCCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAG 1258 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | || || ||||| || ||||| || || | ||| | | ||| |||| ||| | Sbjct 1259 GGATACCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAA 1318 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | || || || ||||| ||||| ||||| || ||||| Sbjct 1319 CCTCGAGGGTTATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTGCAT 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451210533288240