Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq36647 170 5e-37 seq7124 145 2e-29 seq58369 136 9e-27 seq79732 127 5e-24 seq73473 87.8 4e-12 >seq36647 Length=4477 Score = 170 bits (188), Expect = 5e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| |||||||||| || || | |||||| Sbjct 4350 AGTACCAAGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCAGACAGCGTACGGCCATCT 4291 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| |||||||||||||||||| ||| ||||| ||| Sbjct 4290 TCCAACTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTATCC 4231 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| |||||| ||||| | ||| | | || || ||||||||||| ||| Sbjct 4230 TGAATCTTTGCCTTCACATTTTCGATCGAGTCACTCGGCTCCACCTCCAACGTGATGGTC 4171 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 4170 TTGCCAGTCAGGGTCTTCACAAAAATCTG 4142 >seq7124 Length=12460 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || ||||||||||| |||| |||||||| | | || Sbjct 7328 CGTAGACGCAGTACCAAGTGCAGGGTCGACTCCTTCTGGATATTGTAGTCCGAGAGTGTA 7269 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| || ||||||||||| ||| ||| ||| Sbjct 7268 CGACCGTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGAGGAATGCCT 7209 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| |||||| ||||| | ||| | | ||| || |||||| Sbjct 7208 TCCTTATCCTGAATCTTTGCCTTCACATTTTCGATAGAGTCACTCGGTTCCACCTCCAAC 7149 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| ||||| Sbjct 7148 GTGATGGTCTTGCCAGTCAGTGTCTTCACAAAGATTTG 7111 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||||||||| || |||| |||||||| | | || | || || Sbjct 7547 AGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCTGAGAGTGTGCGACCGTCC 7488 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| || ||||| || || ||| ||| ||||| ||| Sbjct 7487 TCCAACTGCTTACCAGCAAAGATCAGGCGCTGTTGATCTGGAGGAATGCCTTCCTTGTCC 7428 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| | ||| | | ||| || ||||| || || ||| Sbjct 7427 TGAATCTTTGCCTTTACATTCTCGATCGAGTCGCTCGGTTCCACCTCCAAAGTTATGGTC 7368 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 7367 TTGCCAGTCAGCGTCTTCACAAAGATCTG 7339 >seq58369 Length=2743 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| || ||||||||||| |||||||||| ||||||||||| | || Sbjct 948 CGGAGACGCAAGACCAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTG 889 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || ||||||||||| || ||||| |||||||| || ||| Sbjct 888 CGGCCATCTTCGAGTTGTTTACCGGCGAAGATCAGTCGCTGTTGGTCCGGGGGGATACCT 829 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||||| | ||| | | ||| || ||||| Sbjct 828 TCCTTATCTTGGATCTTGGCCTTGACATTTTCGATCGAGTCACTGGGTTCGACCTCCAAA 769 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || || || ||||| ||||| Sbjct 768 GTAATCGTCTTACCAGTCAGGGTCTTTACAAAGATTTG 731 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| || || || || || |||||||| | ||||||||| | | ||| Sbjct 492 CGGAGACGCAAGACCAGATGTAGGGTTGATTCCTTTTGAATGTTGTAGTCGGATAGAGTA 433 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| |||||||| || || ||||| |||||||| || || Sbjct 432 CGACCATCTTCGAGTTGCTTGCCGGCGAAAATCAGTCGCTGTTGGTCCGGTGGGATCCCC 373 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||||||| || | | ||| | | ||| || |||| Sbjct 372 TCCTTATCTTGAATTTTAGCCTTCACGTTCTCAATTGAGTCACTGGGTTCGACCTCCAGG 313 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || |||||||||||||| Sbjct 312 GTAATCGTCTTGCCAGTAAGTGTCTTCACAAAAATTTG 275 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || ||||| ||||| ||||| | ||||| |||| | || Sbjct 720 CGGAGCCGCAGCACCAGATGCAGAGTAGACTCTTTTTGAATATTGTAATCAGAGAGCGTA 661 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || || || || ||||||||||| | ||||| ||||| || ||| Sbjct 660 CGGCCATCCTCGAGTTGTTTACCAGCGAAGATGAGTCTTTGCTGATCCGGGGGGATGCCT 601 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || ||| || || || || | | ||| | | ||| || |||| Sbjct 600 TCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCAATAGAGTCACTGGGTTCGACCTCCAG 542 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || || ||||||||||| || Sbjct 541 GGTAATCGTCTTACCAGTCAGGGTCTTCACAAAAATCTG 503 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || || ||||| || || ||||| ||||||||||| | ||| ||||||| | || Sbjct 265 TCGGAGCCTGAGGACCAGATGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGAGAGGGT 206 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || || || |||||||| || || ||||| ||||| || || || Sbjct 205 GCGCCCATCTTCGAGTTGTTTGCCGGCGAAAATCAGTCGCTGTTGGTCTGGTGGTATCCC 146 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| || || |||| | ||| | | || || ||||| Sbjct 145 CTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATCGAGTCACTAGGCTCGACCTCCAA 86 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| || || || || || Sbjct 85 AGTGATAGTTTTGCCAGTCAAAGTCTTAACGAAGATCTG 47 >seq79732 Length=1757 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| ||||| ||||| || || ||||||||||||| || || || | || ||| Sbjct 1147 CGAAGTCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATATTATAATCCGACAGAGTG 1206 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||| || ||||||||||| || || |||||||| ||| || || Sbjct 1207 CGTCCATCCTCAAGCTGTTTGCCGGCGAAGATTAGCCGTTGCTGGTCTGGAGGGATACCC 1266 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||| || ||||| | ||| | | || || || | Sbjct 1267 TCTTTGTCCTGAATCTTGGCCTTTACATTTTCGATTGAGTCCGAAGGCTCAACCTCGAGG 1326 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| ||||| || || Sbjct 1327 GTTATAGTCTTCCCTGTTAGGGTTTTGACAAATATCTG 1364 >seq73473 Length=1996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | || || || |||||||| |||| |||||| |||| | || Sbjct 1624 CGGAGACGCAGGACCAAATGCAGTGTAGACTCCTTCTGGATGTTGTAATCAGAGAGGGTG 1565 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || || || |||||||| |||| || |||||||| || ||||| Sbjct 1564 CGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAATCGTTGCTGGTCTGGTGGGATTCCC 1505 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| |||| |||||| ||| || |||| | ||| | | ||| || || | Sbjct 1504 TCTTTGTCCTAAATCTTAGCCTTGACATTCTCGATCGAGTCGCTAGGTTCAACCTCTAGA 1445 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | || ||||||||||| || Sbjct 1444 GTAATAGTTTTGCCAGTCAACGTCTTCACAAAAATCTG 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176802468529698