Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq58369 132 5e-26 seq36919 132 5e-26 seq73473 105 7e-18 seq36821 96.9 3e-15 seq8609 96.9 3e-15 seq79732 86.0 6e-12 >seq58369 Length=2743 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| |||||||| || ||| | || ||||||||||| || | || ||||| ||| Sbjct 955 AATGCAGATATTCGTTAAGACGTTGACAGGCAAAACCATTACTCTGGAGGTCGAACCCAG 1014 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | ||| | || | || |||| || |||||||| || ||| | ||||| Sbjct 1015 TGACTCCATTGAAAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 1074 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| || ||||| || || || | ||||| ||| ||||||||| Sbjct 1075 ACAACGACTGATATTCGCCGGTAAACAACTAGAAGATGGCCGCACGCTCTCCGACTACAA 1134 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || | || |||||| ||||||||||| | | ||||| Sbjct 1135 TATCCAAAAAGAGTCTACTCTGCATCTGGTGCTGCGTCTTCGTGGCGG 1182 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||| ||||| | || |||||| | | Sbjct 44 ATGCAGATCTTCGTTAAGACTTTGACTGGCAAAACTATCACTTTGGAGGTCGAGCCTAGT 103 Query 38304 GAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||| | || | || | | |||| || |||| ||||||||||| || || | ||| Sbjct 104 GACTCGATCGAG--AATG-TCAAAGCCAAGATCCAAGACAAAGAGGGGATACCACCAGAC 160 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || |||| ||| |||||||| || || || | |||||||||| ||||| Sbjct 161 CAACAGCGACTGATTTTCGCCGGCAAACAACTCGAAGATGGGCGCACCCTCTCTGACTAT 220 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| |||||||| | || |||||| |||| || Sbjct 221 AACATTCAAAAGGAGTCCACTCTGCATCTGGTCCT 255 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || || || || || || || || | || ||||| ||| Sbjct 728 ATGCAAATCTTTGTAAAGACCCTGACTGGTAAGACGATTACTTTGGAGGTCGAACCCAGT 787 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| | || | || |||| || || || || || ||| | |||||| Sbjct 788 GACTCGATCGAAAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATCCCCCCGGACCAA 847 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || ||||| || || || | |||||||| ||||||||| Sbjct 848 CAGCGACTGATCTTCGCCGGTAAACAACTCGAAGATGGCCGCACCCTTTCTGACTACAAC 907 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| |||| || ||| |||| ||||| Sbjct 908 ATCCAAAAGGAATCGACTCTCCATCTGGTCTTGCGT 943 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || || ||| | || ||||| ||| Sbjct 272 ATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGT 331 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||| | || || ||||| || || | ||||| Sbjct 332 GACTCAATTGAGAACG-TGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCA 390 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| ||| ||||| || || || || | || || || ||||||||| Sbjct 391 ACAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAA 450 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||| | || || ||| |||| ||||| Sbjct 451 CATTCAAAAGGAATCAACCCTACATCTGGTCTTGCGT 487 >seq36919 Length=4449 Score = 132 bits (146), Expect = 5e-26 Identities = 236/342 (69%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || |||||||| || |||||||| || || || | || || || || || || ||| Sbjct 2221 TACGTGTCGATAAGAAGGGAATACATCTCTGAATGAATATTTTCGATTGCAATCTGGAAG 2162 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || || || || || || | ||| ||||||||| ||| | | || |||||| Sbjct 2161 CCATAGAAACAGCGGGCTTCTGGGATCTGTACTTCTTGACTGAAGTTCGCCACAAGATTT 2102 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 || || || || |||||||| ||||| |||||||| || |||| ||||| || | Sbjct 2101 TCATTTACTATTCCGTCGCTTGCGGCAAAAAAGGCAAGGACGTATGAAATGAAGTGCTTC 2042 Query 133348 TCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACG 133407 ||| ||| || | |||||||| | ||| || | || ||| || || || ||| Sbjct 2041 TCGCCGTCCTTTAGAGATTCCCAGTCACCAAGGTCTTTCGCCAAGTCAACTTCTTCAACG 1982 Query 133408 GTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTGTATGGG 133466 |||||||| || ||| | ||||| ||||| | ||| ||| || || ||| || || || Sbjct 1981 GTCCAAAATGAAGCCACCGCTTTCTTGTA-AAACTGCCAGATATCATGATACTGGATAGG 1923 Query 133467 AAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 | ||||| ||||| | ||||| || || |||||||| Sbjct 1922 CATGATCACGAACCGTCTCGGGTTCTCAACCAGAAGCGGCTC 1881 >seq73473 Length=1996 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 |||||||||||||| || | ||||| || || |||||| ||| || ||||| || || Sbjct 1497 GACAAAGAGGGAATCCCACCAGACCAGCAACGATTCATTTTCGCCGGTAAACAACTCGAA 1556 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||||||| || ||||||||||| ||||| | || ||||||||||| ||| Sbjct 1557 GACGGCCGCACCCTCTCTGATTACAACATCCAGAAGGAGTCTACACTGCATTTGGTCCTG 1616 Query 38457 CGT 38459 ||| Sbjct 1617 CGT 1619 >seq36821 Length=4459 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| || || || | || || ||| ||| | Sbjct 1340 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 1399 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | |||| | || |||| ||||| || ||||| ||| | ||||| Sbjct 1400 GACTCGATTGAGAATG-TTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 1458 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || || | ||| || ||||| || || || | ||||| ||| || ||||| Sbjct 1459 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 1518 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| || | || ||||| |||| ||||| Sbjct 1519 CATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCGT 1555 >seq8609 Length=11408 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || ||||| || || || | || || ||| ||| | Sbjct 10223 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACTATTACTCTAGAGGTTGAGCCCAGC 10282 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | |||| | || |||| ||||| || ||||| ||| | ||||| Sbjct 10283 GACTCGATTGAGAATG-TTAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCA 10341 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || || | ||| || ||||| || || || | ||||| ||| || ||||| Sbjct 10342 ACAGAGACTAATCTTCGCCGGTAAACAACTCGAGGATGGCCGCACGCTCTCTGATTACAA 10401 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| || | || ||||| |||| ||||| Sbjct 10402 CATCCAAAAAGAGTCTACATTGCATCTGGTCTTGCGT 10438 >seq79732 Length=1757 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || || || || ||| |||| || ||| | | Sbjct 1367 ATGCAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1308 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | ||| | || | || || | ||||||||||| || || | ||||| Sbjct 1307 GACTCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCAG 1248 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || ||||| || | ||| ||||||||||| || || | ||||| || || || || Sbjct 1247 CAACGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAAT 1188 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||| | || || || |||| || Sbjct 1187 ATCCAAAAGGAGTCCACCCTTCACCTGGTCCT 1156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499295659464960