Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diphyllobothrium_20latum_20[genbank_20GCA_5F000950535.1_202014-09- 25] 140,294 sequences; 531,434,409 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq11559 145 3e-29 seq79732 100 1e-15 seq1102 95.1 5e-14 seq42856 91.5 6e-13 seq58369 87.8 7e-12 >seq11559 Length=9825 Score = 145 bits (160), Expect = 3e-29 Identities = 250/360 (69%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| ||||| ||||| || ||||||| ||| | | ||||| ||| || || Sbjct 2157 TTTGCCCCTGAGGAAATATCTGCTATGGTCCTTGGTCACATGAAGCAAATCGCCGAGGCT 2216 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | || | ||| ||| |||| || || ||||| || || || ||||| ||||| Sbjct 2217 TATTTGGGGACCAAAGTCACTCATGCTGTCATAACTGTGCCAGCATACTTCAACGATGCT 2276 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || |||| |||||||| || |||||||||| | ||||| | || || || Sbjct 2277 CAGCGACAGTCAACAAAAGATGCTGGCGTTATTGCTGGTCTGAATGTGTTGCGGATAATC 2336 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || ||||| || ||||| || | || || ||| | ||| || ||| || | || Sbjct 2337 AACGAACCCACGGCAGCGGCAATTGCTTACGGATT-GGACAAG---AAGGAA--GGCGAG 2390 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || ||||| | ||||| ||| | || || || || |||| |||| || | ||||| Sbjct 2391 AAGAATATCCTGGTATTCGATCTCGGAGGTGGCACCTTTGATGTTTCTTTAATGACAATT 2450 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || | || || || || || || |||| ||||||||| ||||| |||||||||||| Sbjct 2451 GACAACGGAGTCTTCGAGGTCCTTGCCACCAGTGGTGATACACATCTTGGAGGTGAAGAT 2510 >seq79732 Length=1757 Score = 100 bits (110), Expect = 1e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || ||||| || || || ||||| | || Sbjct 1367 ATGCAGATATTTGTCAAAACCCTAACAGGGAAGACTATAACCCTCGAGGTTGAGCCTTCG 1308 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || || ||| | | || || ||||| || || || || || ||||| || || Sbjct 1307 GACTCAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCAGACCAG 1248 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| |||| ||| | || ||||| ||||| |||||| | ||| || ||||||||||| Sbjct 1247 CAACGGCTAATCTTCGCCGGCAAACAGCTTGAGGATGGACGCACTCTGTCGGATTATAAT 1188 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || |||||| | || | ||||| Sbjct 1187 ATCCAAAAGGAGTCCACCCTTCACCTGGTCCTCAGACT 1150 >seq1102 Length=24202 Score = 95.1 bits (104), Expect = 5e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 ||||| || || || ||||| | |||||||||||||| || || || | || Sbjct 2873 GAAGAGATCTCCTCAATGGTGTTGGTGAAAATGAAAGAAACTGCGGAGGCCTACCTAGGC 2814 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 |||| |||||||| || | ||||| || || |||||||||||| ||||| || Sbjct 2813 AAGACAGTCACTGATGCGGTTGTCACTGTGCCTGCCTATTTCAATGATAGCCAACGTCAG 2754 Query 451367 GCAACTAAAGATGCAGGA--CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 || || ||||| || ||| ||||| | ||| | || ||| | || || ||||| |||| Sbjct 2753 GCCACGAAAGACGCCGGAACCATAT--CCGGTCTTAACGTTTTGCGCATCATTAACGAAC 2696 Query 451425 CTACAGCAGCTGCTCTAGCATATGGACT 451452 | || || ||||| |||| || ||||| Sbjct 2695 CGACGGCCGCTGCGATAGCTTACGGACT 2668 >seq42856 Length=3867 Score = 91.5 bits (100), Expect = 6e-13 Identities = 167/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 |||||||| | ||||| || | | ||| ||||| || || || || || || || Sbjct 676 GGAAAGCCAAAGATTCAGGTGGAATGTAAGGGTGAGACGAAGACCTTCTTCCCCGAGGAG 735 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||||||||| || || ||||| || || || ||| | | || ||| Sbjct 736 ATCTCATCTATGGTGCTGTTGAAGATGAAGGAGACGGCCGAAGCTTTCCTGGGCCGTCCG 795 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || ||||| || |||||||||| || || |||||||| | || | || || || Sbjct 796 GTGACGGATGCGGTGGTTACTGTTCCTGCCTACTTCAATGACGGTCAGAGACAGGCCACA 855 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || |||| | || | ||||| ||||| || || || || || || || Sbjct 856 AAAGATGCTGGCACTATTTCGGGCCTGAATGTGCTTCGCATCATCAACGAGCCGACTGCC 915 Query 451433 GCTGC 451437 || || Sbjct 916 GCAGC 920 >seq58369 Length=2743 Score = 87.8 bits (96), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||||| ||||| || || ||||| || || || ||| | | Sbjct 272 ATGCAAATTTTTGTGAAGACACTTACTGGCAAGACGATTACCCTGGAGGTCGAACCCAGT 331 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || ||||||||||||||||| || || || || || ||| Sbjct 332 GACTCAATTGAGAACGTGAAGGCTAAAATTCAAGATAAGGAGGGGATCCCACCGGACCAA 391 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | |||||| | || || ||||| |||||||| | ||| | | || || || Sbjct 392 CAGCGACTGATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACTCTATCCGACTACAAC 451 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| |||| || || Sbjct 452 ATTCAAAAGGAATCAACCCTACA 474 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||||||||| || ||||| || || || ||| | | Sbjct 500 ATGCAGATTTTTGTGAAGACCCTGACTGGTAAGACGATTACCCTGGAGGTCGAACCCAGT 559 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | | ||| ||||| ||||| || ||||| || || || ||||| Sbjct 560 GACTCTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCCCCGGATCAG 619 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || ||| | || |||||||| || ||||| | || | | ||||| ||| Sbjct 620 CAAAGACTCATCTTCGCTGGTAAACAACTCGAGGATGGCCGTACGCTCTCTGATTACAAT 679 Query 391230 ATTGATAAGGA 391240 ||| | || || Sbjct 680 ATTCAAAAAGA 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1972167012835752